Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g0370 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0371 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0372 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0373 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0374 . . . . . . . . Aev10g2369 . Ahy18g1230 . Aip08g01304 . . . Amo18g1417 . . . . . . . . . . . Car01g02104 . . . . . Dod10g1068 . . . . . Gma06g02332 . . . Gso6g2123 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal4g1013 . . . . . . . Mtr2g2708 . . . . . . . Psa5g5688 . . . . . . . . . . . . . . . . . . . Sto7g0327 Sto4g2924 Tpr7g3613 . . . Tsu02g04493 . . . . . . . . . . . . .
Vvi19g0375 . . . . . . . . . . . . . . . . . . Apr2g0338 Apr5g0063 . . . . . . Bva09g00790 Bva07g01824 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0376 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Gma12g01349 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal5g2420 . . . . . . . Mtr8g1709 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0377 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0378 . . . . . . Aed1g0671 . Aev10g2366 . Ahy18g1226 . Aip08g01301 . . . Amo18g1415 . Apr2g0337 . . . . . . . . Bva07g01827 Car01g02105 . Cca10g01038 . . . Dod10g1069 . . . . . . . Gma12g02054 Gma13g02500 . . . . . Lal1g1661 . . . . . . . . . . . . . . . . . . . . . . . Lja3g4476 Mal4g1011 . . . . . . . Mtr2g2709 . . . . . . . . . . . . . . . . . . . . . . . . . Ssu8g1075 . Sto7g0328 . Tpr7g3615 . . . Tsu02g04496 . . . . . . . . . . . . .
Vvi19g0379 . . . . . . Aed1g0672 . . . . . . . . . . . . . . . . . . . Bva09g00788 Bva07g01828 . . Cca10g01037 . . . . . . . . . . . Gma12g02053 Gma13g02501 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu8g1072 . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi19g0370 Chr19 3974900 3975187 +
Vvi Vvi19g0371 Chr19 4028687 4028980 +
Vvi Vvi19g0372 Chr19 4074317 4074610 +
Vvi Vvi19g0373 Chr19 4082678 4082962 -
Vvi Vvi19g0374 Chr19 4088830 4092360 -
Aev Aev10g2369 Chr10 23384713 23391413 +
Ahy Ahy18g1230 Chr18 21050803 21057197 +
Aip Aip08g01304 Chr08 20077439 20083356 +
Amo Amo18g1417 Chr18 26528496 26534396 +
Car Car01g02104 Chr01 46487198 46495922 -
Dod Dod10g1068 Chr10 28977654 28985646 -
Gma Gma06g02332 Chr06 44284100 44293287 -
Gso Gso6g2123 Chr6 40232642 40241690 -
Mal Mal4g1013 Chr4 13995485 14008893 +
Mtr Mtr2g2708 Chr2 40153819 40162956 -
Psa Psa5g5688 Chr5 493576395 493586527 -
Sto Sto7g0327 Chr7 2308583 2316927 -
Sto Sto4g2924 Chr4 29737802 29746831 -
Tpr Tpr7g3613 Chr7 44744168 44752256 -
Tsu Tsu02g04493 Chr02 53827696 53835991 -
Vvi Vvi19g0375 Chr19 4092388 4097558 -
Apr Apr2g0338 Chr2 4064800 4072409 +
Apr Apr5g0063 Chr5 593057 602241 +
Bva Bva09g00790 Chr09 4066845 4073578 +
Bva Bva07g01824 Chr07 16549734 16556810 -
Vvi Vvi19g0376 Chr19 4111005 4154980 -
Gma Gma12g01349 Chr12 20674701 20690414 +
Mal Mal5g2420 Chr5 66220418 66245232 -
Mtr Mtr8g1709 Chr8 25269204 25270905 -
Vvi Vvi19g0377 Chr19 4161187 4162149 +
Vvi Vvi19g0378 Chr19 4163263 4172072 +
Aed Aed1g0671 Chr1 7973813 7981361 +
Aev Aev10g2366 Chr10 23372195 23376423 -
Ahy Ahy18g1226 Chr18 20931695 20940540 -
Aip Aip08g01301 Chr08 19966617 19971412 -
Amo Amo18g1415 Chr18 26508647 26513451 -
Apr Apr2g0337 Chr2 4039908 4049135 -
Bva Bva07g01827 Chr07 16565794 16569387 +
Car Car01g02105 Chr01 46511673 46523648 +
Cca Cca10g01038 Chr10 12750113 12758759 -
Dod Dod10g1069 Chr10 29007812 29013203 +
Gma Gma12g02054 Chr12 41223123 41230419 -
Gma Gma13g02500 Chr13 39874076 39881555 +
Lal Lal1g1661 Chr1 19014523 19022238 +
Lja Lja3g4476 Chr3 86443308 86450911 -
Mal Mal4g1011 Chr4 13954572 13965182 -
Mtr Mtr2g2709 Chr2 40185760 40194158 +
Ssu Ssu8g1075 Chr8 18908188 18912884 -
Sto Sto7g0328 Chr7 2319253 2323240 +
Tpr Tpr7g3615 Chr7 44773916 44784368 +
Tsu Tsu02g04496 Chr02 53846095 53853721 +
Vvi Vvi19g0379 Chr19 4181585 4183030 +
Aed Aed1g0672 Chr1 7992265 7993597 +
Bva Bva09g00788 Chr09 4056447 4059057 -
Bva Bva07g01828 Chr07 16573598 16574912 +
Cca Cca10g01037 Chr10 12741690 12743115 -
Gma Gma12g02053 Chr12 41215439 41216820 -
Gma Gma13g02501 Chr13 39887065 39888459 +
Ssu Ssu8g1072 Chr8 18824217 18825534 -