Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2010 ATGGCATCCAGGAGGAACTCGGTTGTTTTTGAGGACTACTTCCCTGCAATGATGGAGAAACTGGGCACTGATGGGTTCATGAAGGAGCTGACAAATGGTTTTCAGTTGTTGATGGACAGAGAGAAGAATGTGATAACGTTTGAGAGCTTGAAGAGAAACTCTGCATTGCTTGGGTTGGAAGGGATGAATGATGATGAGATAAGGTGCATGCTGAGAGAAGGTGATCTTGATGGTGATGGAGCACTGGATGAGATGGAGTTCTGCACCCTCATGTTCAGGTTGAGTCCTGCTTTGATGAACAATTCCAAGGAACTTTTGGAGGAAGCCATTTTCCCTTCTTATTAG 345 0.4493 MASRRNSVVFEDYFPAMMEKLGTDGFMKELTNGFQLLMDREKNVITFESLKRNSALLGLEGMNDDEIRCMLREGDLDGDGALDEMEFCTLMFRLSPALMNNSKELLEEAIFPSY* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2010 114 ProSiteProfiles EF-hand calcium-binding domain profile. 62 97 IPR002048 GO:0005509
Pvu6g2010 114 SUPERFAMILY EF-hand 8 91 IPR011992 -
Pvu6g2010 114 Gene3D - 8 113 - -
Pvu6g2010 114 PANTHER CALCIUM-BINDING PROTEIN KIC 1 111 IPR044205 GO:0005509
Pvu6g2010 114 ProSitePatterns EF-hand calcium-binding domain. 75 87 IPR018247 -
Pvu6g2010 114 Pfam EF-hand domain pair 42 93 IPR002048 GO:0005509
Pvu6g2010 114 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 1 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2010 Pvu-Chr6 30094642 30095438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g2010 10 110 EF-hand Containing Proteins AT4G27280 59.804 6.13e-39 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2010 K24345 - gmx:100306210 203.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g2010 6 30094642 30095438 Pvu6g2010 6 30094642 30095438 ECH