Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1009 ATGGAATTGAATTTTGGTATGGATTTTGAGGACTACTTTCCATCCATGATTTCACGTTTAGGAGCAGAAGGGTTTATAGGTGAACTTTGCAACGGATTTCGTTTGCTTATGGATGTGAACAAAGGTCTTATAACATTTGAGAGCTTGAAGATGAATTGTTTCATGCTTGGTTTGGAGGTGAGGGATGATGAGCTTTTGTGCATGCTAATGGAAGGTGATTTGGATGGAGATGGTGCTTTAAATCAAATGGAGTTTTGCATTCTCATGTTTAGGTTGAGTCCATGTTTAATGGATGGACCTAAATTGTGCACAACTCATCAAGGTGTGGATCCAATGTTAATGTAA 345 0.3826 MELNFGMDFEDYFPSMISRLGAEGFIGELCNGFRLLMDVNKGLITFESLKMNCFMLGLEVRDDELLCMLMEGDLDGDGALNQMEFCILMFRLSPCLMDGPKLCTTHQGVDPMLM* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1009 114 PANTHER CALCIUM-BINDING PROTEIN PBP1-LIKE 5 106 - -
Mal4g1009 114 Pfam EF-hand domain pair 41 91 IPR002048 GO:0005509
Mal4g1009 114 ProSitePatterns EF-hand calcium-binding domain. 73 85 IPR018247 -
Mal4g1009 114 Gene3D - 7 107 - -
Mal4g1009 114 PANTHER CALCIUM-BINDING PROTEIN KIC 5 106 IPR044205 GO:0005509
Mal4g1009 114 SUPERFAMILY EF-hand 23 95 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1009 Mal-Chr4 13909834 13910178 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g1009 2 106 EF-hand Containing Proteins AT4G27280 56.075 3.12e-34 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g1009 K24345 - gmx:100794479 191.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g1009 4 13909834 13910178 Mal4g1009 4 13909834 13910178 ECH