Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01177 ATGGCATCCAGGAAGAACACGGTTGTTTTTGAGGACTACTTCCCTGCAATGATGGAGAAACTGGGCACCGAGGGGTTCATGAAGGAGCTGACAAACGGTTTTCAGTTGTTGATGGACAGAGAGAAGAAGGTGATAACGTTTGAGAGCTTGAAGAGGAACTCTGCATTGCTTGGTTTGGAAGGGATGAATGATGAGGAGATAAGGTGCATGCTAAGAGAAGGTGATCTTGATGGTGATGGAGCACTGGATGAGATGGAGTTCTGCACCCTCATGTTCAGGTTGAGTCCTGCTTTGATGAACAATTCCAAAGAAATTTTGGAGGAAGCCATTTTCCCTTCTCATTAG 345 0.4551 MASRKNTVVFEDYFPAMMEKLGTEGFMKELTNGFQLLMDREKKVITFESLKRNSALLGLEGMNDEEIRCMLREGDLDGDGALDEMEFCTLMFRLSPALMNNSKEILEEAIFPSH* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01177 114 ProSiteProfiles EF-hand calcium-binding domain profile. 62 97 IPR002048 GO:0005509
Lapu6g01177 114 ProSitePatterns EF-hand calcium-binding domain. 75 87 IPR018247 -
Lapu6g01177 114 Pfam EF-hand domain pair 41 93 IPR002048 GO:0005509
Lapu6g01177 114 PANTHER CALCIUM-BINDING PROTEIN KIC 8 110 IPR044205 GO:0005509
Lapu6g01177 114 SUPERFAMILY EF-hand 6 91 IPR011992 -
Lapu6g01177 114 Gene3D - 8 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01177 Lapu-Chr6 11652375 11653100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01177 10 110 EF-hand Containing Proteins AT4G27280 60.784 1.13e-39 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01177 K24345 - gmx:100306210 209.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01177 6 11652375 11653100 Lapu6g01177 6 11652375 11653100 ECH