Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1088 ATGGAACTCGATTACGGTTGTTTCGACTTCGAGGACCGGTTCCCGTCGATGATTGCGCGGCTGGGCGCGGAGGGCTTCATCGGGGAGCTCTGCAGCGGGTTCCGGCTGCTCATGGACGTGAACATGGGCCTCATAACGTTCGAGAGCTTGAAGATGAGCAGCTACATGCTCGGCTTGGAGGTGAGGGACGATGAGCTTCTATGCATGCTCATGGAAGGTGACTTGGACGGCTTGAAAGATACTCAGAGGTGGTGA 255 0.5647 MELDYGCFDFEDRFPSMIARLGAEGFIGELCSGFRLLMDVNMGLITFESLKMSSYMLGLEVRDDELLCMLMEGDLDGLKDTQRW 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1088 84 Gene3D - 8 81 - -
Aed5g1088 84 SUPERFAMILY EF-hand 6 77 IPR011992 -
Aed5g1088 84 Coils Coil 81 84 - -
Aed5g1088 84 PANTHER CALCIUM-BINDING PROTEIN PBP1-LIKE 4 77 - -
Aed5g1088 84 PANTHER CALCIUM-BINDING PROTEIN KIC 4 77 IPR044205 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1088 Aed-Chr5 9169995 9171193 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1088 9 76 EF-hand Containing Proteins AT4G27280 51.429 4.09e-17 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1088 K24345 - gmx:100795879 141.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1088 5 9169995 9171193 Aed5g1088 5 9169995 9171193 ECH