Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00550 ATGGGATCCAGGAAGAACCCGGTTGTTTTTGAGGACTACTTCCCTGCAATGATGGAGAAGCTGGGAACTGAGGGGTTCATGAAGGAGCTGACGAACGGTTTTCAGTTGTTGATGGACGGAGAGAAGAAGGTGATAACGTTTGAGAGCTTGAAGAGAAACTCTGCATTGCTTGGGTTGGAAGGGATGAATGATGATGAGATAAGGTGCATGCTAAGAGAAGGTGATCTTGATGGTGATGGAGCACTCGATGAGATGGAATTCTGCACTCTAATGTTCAGGTTGAGCCCTGCTTTGATGAACAATTCCAAGGAACTTTTGGAGGAAGCCATTTTCCCTTTTCATTAG 345 0.4551 MGSRKNPVVFEDYFPAMMEKLGTEGFMKELTNGFQLLMDGEKKVITFESLKRNSALLGLEGMNDDEIRCMLREGDLDGDGALDEMEFCTLMFRLSPALMNNSKELLEEAIFPFH 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00550 114 SUPERFAMILY EF-hand 23 100 IPR011992 -
Vimu2g00550 114 ProSitePatterns EF-hand calcium-binding domain. 75 87 IPR018247 -
Vimu2g00550 114 Pfam EF-hand domain pair 41 93 IPR002048 GO:0005509
Vimu2g00550 114 Gene3D - 8 112 - -
Vimu2g00550 114 ProSiteProfiles EF-hand calcium-binding domain profile. 62 97 IPR002048 GO:0005509
Vimu2g00550 114 PANTHER CALCIUM-BINDING PROTEIN KIC 8 110 IPR044205 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00550 Vimu-Chr2 3206610 3206954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00550 3 110 EF-hand Containing Proteins AT4G27280 57.273 3.98e-38 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00550 K24345 - gmx:100306210 207.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00550 2 3206610 3206954 Vimu2g00550 2 3206610 3206954 ECH