Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1884 atgGAACCGGATTATGGCTTTCACTTCGAGGACAGTTTCCCTTCGATGATTGCACGGTTAGGTGCTGAAGGGTTCATCGGGGAGCTTTGCAACGGGTTTCGTTTGCTCATGGATGTGAACATGGGGCTCATAACGTTCGAGAGCTTGAAGATTAGCACTTGTTTGCTCGGTTTGGAGGTGAGGGATGATGAGTTGTTGTGCATGCTGATGGAGGGTGATTTGGATGGAGATGGGGCTCTTAACCAGATGGAGTTTTGCATTCTCATGTTTAGGTTGAGTCCATGCTTGATGGACATGCAAGGTATGGATCCGGTGCATGTTAATGTGATATAA 333 0.4685 MEPDYGFHFEDSFPSMIARLGAEGFIGELCNGFRLLMDVNMGLITFESLKISTCLLGLEVRDDELLCMLMEGDLDGDGALNQMEFCILMFRLSPCLMDMQGMDPVHVNVI 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1884 110 SUPERFAMILY EF-hand 24 96 IPR011992 -
Ssu3g1884 110 Gene3D - 7 104 - -
Ssu3g1884 110 Pfam EF-hand domain pair 42 91 IPR002048 GO:0005509
Ssu3g1884 110 ProSitePatterns EF-hand calcium-binding domain. 73 85 IPR018247 -
Ssu3g1884 110 PANTHER CALCIUM-BINDING PROTEIN PBP1-LIKE 5 100 - -
Ssu3g1884 110 PANTHER CALCIUM-BINDING PROTEIN KIC 5 100 IPR044205 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1884 Ssu-Chr3 58606063 58606395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1884 3 98 EF-hand Containing Proteins AT4G27280 59.184 1.35e-31 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1884 K24345 - gmx:100795879 207.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1884 3 58606063 58606395 Ssu3g1884 3 58606063 58606395 ECH