Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g0270 . . . . . . . Aed5g1151 . . . . . . . . . . . . . . . . . . Bva09g00856 Bva07g01756 . . . Cca04g01420 . . . . . . . . Gma06g02240 Gma12g01415 Gma12g02103 . Gso6g2050 Gso6g2050 Gso6g2050 . . Lal1g1641 . . . . . . . . . . . . . . . . . . . . . . . . Mal4g1427 . . . . . . . Mtr2g2646 . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu3g1814 . . Tpr7g3549 . . . Tsu02g04404 . . . . . . . . . . . . .
Vvi19g0271 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0272 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0273 Acco01g3283 . Accr1g02960 . Adu08g02010 . Aed1g0615 . Aev10g1382 . Ahy18g1332 . Aip08g01427 . Alju02g0739 . Amo18g1550 . Apr2g0388 . . . Bach13g00792 . Bisa12g0582 . Bva09g00852 Bva07g01760 Car01g02056 . Cca10g01092 . Dere08g0439 . Dod10g1002 . Enph3g0979 . Glsi14g1064 . . . . Gma13g02458 . . . . . . . Lal20g0327 . . . . . . . . . . . . Lele09g0679 Lele10g0619 Lele11g0692 Lele12g0648 . . . . . . Mal4g1425 . . . . . Mibi01g0648 . Mtr2g2647 . . . . . Prci7g1899 . . . . . . . . . Pumo4g03448 . Pvu5g0733 . Rops7g01326 . Seca4g06106 . . . Ssu8g1142 . Sto7g0266 . Tpr7g3550 . . . Tsu02g04405 . Vian11g01013 . Vifa1g02943 . . . Viun5g02636 . . . . .
Vvi19g0274 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0275 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0276 . . . . . . . Aed5g1145 . . . Ahy13g1898 . Aip03g02111 . . . . . Apr5g0105 . . . . . . Bva09g00851 Bva07g01761 . Car07g02179 . Cca04g01417 . . . . . . . . Gma06g02244 Gma12g01407 . . Gso6g2053 Gso6g2053 . . . . Lal2g0578 . Lal1g0567 . . . . . . . . . . . . . . . . . . . . Lja3g4817 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu3g1818 Sto7g0267 . . . . . . . . . . . . . . . . . . Vra2g1240
Vvi19g0277 . . . . . . Aed1g0616 . Aev10g1383 . Ahy18g1331 . Aip08g01426 . . . . . Apr2g0387 . . . . . . . . Bva07g01762 . . Cca10g01091 . . . Dod10g1003 . . . . . . . Gma12g02100 Gma13g02459 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu8g1141 . . . . . . . . . . . . . . . . . . . . .
Vvi19g0278 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0279 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi19g0270 Chr19 2856127 2858877 +
Aed Aed5g1151 Chr5 9877475 9879421 -
Bva Bva09g00856 Chr09 4413752 4417088 -
Bva Bva07g01756 Chr07 16219340 16220623 +
Cca Cca04g01420 Chr04 18761489 18764344 -
Gma Gma06g02240 Chr06 41861509 41864632 +
Gma Gma12g01415 Chr12 22570447 22578652 -
Gma Gma12g02103 Chr12 41799637 41802316 -
Gso Gso6g2050 Chr6 37902532 37905279 +
Gso Gso6g2050 Chr6 37902532 37905279 +
Gso Gso6g2050 Chr6 37902532 37905279 +
Lal Lal1g1641 Chr1 18811675 18814389 +
Mal Mal4g1427 Chr4 21387757 21390486 -
Mtr Mtr2g2646 Chr2 39506919 39509696 +
Ssu Ssu3g1814 Chr3 56902524 56903835 +
Tpr Tpr7g3549 Chr7 44035888 44038617 +
Tsu Tsu02g04404 Chr02 52831684 52834389 +
Vvi Vvi19g0271 Chr19 2860731 2861126 +
Vvi Vvi19g0272 Chr19 2881587 2882066 -
Vvi Vvi19g0273 Chr19 2889428 2898907 +
Acco Acco01g3283 Chr01 50040393 50046418 +
Accr Accr1g02960 Chr1 66382897 66388890 +
Adu Adu08g02010 Chr08 33595257 33601078 -
Aed Aed1g0615 Chr1 7488765 7493964 +
Aev Aev10g1382 Chr10 17200222 17209294 +
Ahy Ahy18g1332 Chr18 24469041 24474843 -
Aip Aip08g01427 Chr08 23243135 23248871 -
Alju Alju02g0739 Chr02 5454499 5464863 -
Amo Amo18g1550 Chr18 30326144 30332041 -
Apr Apr2g0388 Chr2 4589185 4595529 -
Bach Bach13g00792 Chr13 13389948 13395792 +
Bisa Bisa12g0582 Chr12 8620869 8626623 +
Bva Bva09g00852 Chr09 4400923 4406405 -
Bva Bva07g01760 Chr07 16226075 16231895 +
Car Car01g02056 Chr01 45915161 45920920 +
Cca Cca10g01092 Chr10 13829512 13837968 -
Dere Dere08g0439 Chr08 6896370 6903130 +
Dod Dod10g1002 Chr10 28082949 28088702 +
Enph Enph3g0979 Chr3 31029428 31036295 +
Glsi Glsi14g1064 Chr14 11712345 11717973 +
Gma Gma13g02458 Chr13 39386781 39393119 +
Lal Lal20g0327 Chr20 2641391 2648195 -
Lele Lele09g0679 Chr09 5151219 5155467 +
Lele Lele10g0619 Chr10 4574351 4578641 +
Lele Lele11g0692 Chr11 6571952 6576165 +
Lele Lele12g0648 Chr12 14804268 14809855 -
Mal Mal4g1425 Chr4 21300180 21306058 -
Mibi Mibi01g0648 Chr01 6206191 6211352 -
Mtr Mtr2g2647 Chr2 39514277 39521152 +
Prci Prci7g1899 Chr7 33531927 33539167 +
Pumo Pumo4g03448 Chr4 72201581 72208025 +
Pvu Pvu5g0733 Chr5 11716829 11724344 +
Rops Rops7g01326 Chr7 18008204 18014346 +
Seca Seca4g06106 Chr4 119730890 119736947 -
Ssu Ssu8g1142 Chr8 20308082 20314178 -
Sto Sto7g0266 Chr7 1871011 1876386 +
Tpr Tpr7g3550 Chr7 44042631 44049982 +
Tsu Tsu02g04405 Chr02 52840403 52847903 +
Vian Vian11g01013 Chr11 13495011 13500399 -
Vifa Vifa1g02943 Chr1 458463226 458468643 -
Viun Viun5g02636 Chr5 37619190 37626171 +
Vvi Vvi19g0274 Chr19 2914881 2917363 -
Vvi Vvi19g0275 Chr19 2925029 2929554 -
Vvi Vvi19g0276 Chr19 2944812 2948972 +
Aed Aed5g1145 Chr5 9803860 9813273 -
Ahy Ahy13g1898 Chr13 32229008 32236973 -
Aip Aip03g02111 Chr03 31031291 31038816 -
Apr Apr5g0105 Chr5 935859 941620 -
Bva Bva09g00851 Chr09 4397337 4400128 -
Bva Bva07g01761 Chr07 16232078 16235157 +
Car Car07g02179 Chr07 30221494 30229792 -
Cca Cca04g01417 Chr04 18725901 18731934 -
Gma Gma06g02244 Chr06 41886131 41889864 +
Gma Gma12g01407 Chr12 22450032 22454737 -
Gso Gso6g2053 Chr6 37926606 37930800 +
Gso Gso6g2053 Chr6 37926606 37930800 +
Lal Lal2g0578 Chr2 3476374 3480258 -
Lal Lal1g0567 Chr1 3651222 3655145 -
Lja Lja3g4817 Chr3 90228445 90231907 -
Ssu Ssu3g1818 Chr3 56979623 56985709 +
Sto Sto7g0267 Chr7 1878605 1882093 +
Vra Vra2g1240 Chr2 17622844 17627160 +
Vvi Vvi19g0277 Chr19 2950156 2950662 -
Aed Aed1g0616 Chr1 7494116 7496019 -
Aev Aev10g1383 Chr10 17210955 17211861 -
Ahy Ahy18g1331 Chr18 24453510 24465977 +
Aip Aip08g01426 Chr08 23238002 23241151 +
Apr Apr2g0387 Chr2 4586704 4587419 +
Bva Bva07g01762 Chr07 16235535 16236787 -
Cca Cca10g01091 Chr10 13827226 13828162 +
Dod Dod10g1003 Chr10 28090709 28091603 -
Gma Gma12g02100 Chr12 41789312 41790607 +
Gma Gma13g02459 Chr13 39394428 39396080 -
Ssu Ssu8g1141 Chr8 20304141 20304741 +
Vvi Vvi19g0278 Chr19 2952274 2953798 -
Vvi Vvi19g0279 Chr19 2974921 2977185 -