Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0274 ATGACCACCTTGCATGGAAGCGCCCCGTCTCTTCGGAGACGTGCAGAGGGTTGCGTACCGCCGGAGGGGAGTCAGTTTAGGAGTCGGTTGAGTCTGGAGTCACATTCTTGGAGGAGAGTTCGAGGACGATTGATCAGAGCAGATTCATATCCGAGTTCAGATAGTTCAGTTGAGATGTCAGACGAGCTAGCTTCCACACTTGCTTCCATTCAGGAGTTCATGGCCGGAGTCAGTAGACGCTTGGATCAGTTAGAGAGTTCTCGTCAGGATCCTCATCCGGCTGGCGTGGTCACTGACGAGACGATTCCTCATGCATCTCAGACAGCACAGACTCGTCCACCTGGGGTTTCACTTAGTACTCCATTCCATTTGGCAGATCATTATGAGACCATTCCACCACCTACTATCACAGTGTCGCCTCCCATGGTTCCTACTATTGGGGATACTCGATTGGCCGAGCAGGAGGCCAAGGTTGAGAGGCTCGAGTCCATGATGAGACAGATCAGATTGCAGGACGGAGGTTTGACTTGGGATGACAGAGATGGCATACCGGCAGCTAGCTTGCCCGCCAAGTTCCGCATGCCAGACATTGAGCGCTACAGTGGGATTGGTTGTCCCAAGATCCACTTGAGATTATACAGCACTGTCATGAGGGCGCACGGGATAGATGATGCACAGCTGGTGACCCTCTTTCCCATGTCACTTAGTGGGGCAGCTCAGAGATGGTTTGCTTCAGTTGAGCCTTCGAGACTCTGCACTTGGGAGGATGTGGCTCGTGAGTTCCTGACCCAGTTCGCTTTCAGTGCCGATATTGACGTATCTAGACAAGAGTTGGAGGCCACTAGACAGAGGCCAGATGAGTCTATTTCTTCCTTTGTCACTCGTTGGAGGGCGAAGGTGGCTGGTATGATAGACCGGCCTAAGGAGCAGGATCAGATTGATATGGTTCTTCGGAACCTACAGTCGAGGTTCGCTAGACGTCTGGTGGGCATCCCATTTCAGGATCTTAGGAGTTTGGTTCATGCTGCTTTCAGTGTAGAGGAGGCTATGGCTCGAGGATTATGGACAGATACTGCTGCTTCCCCTGACAGTAAAGGGAAGAAGCTGATTGGACCATTGACCAGATCTGGAGAGGTTGGTGCTATTAGCTATCAGCACCGGAGGCCCGCGCATCACTCAGCTTATAGGTCTCCTACAGTCAGAGCTCCTTTCTCTCTTCCACAGTATCAGTATCAGCTGGATTATGCTCAGGAGCCTTACATTGCTCAGACTAGCATGCAGCCACGACCACCACATCCGAGAGCCGCTACTCGCCCACCGCTTAGACCATATGCACAGAGGCCCCCGAGACAGTTCACTCCCTTGGGCATGACTTTGACTAGAGCTTTTGAGAAGCTTAGAGACGCTGGAGTGATTGTTCCTTTGGCACCGAGGCCTTTGCCCCATCCTATTCCTCCCCATTTTCGTTCACATGAGCACTGCTTGTATCATCAGATTCCGGGGCACGATACTGAGCATTGTTCAGCACTCCATCATGCGATACAGGATTTGATCGATTCAGGGGTGGTTGACTTGGCTAGGCCAAGTGTGACCACCAATCCCCTGCCTGCACATTCTACACACGCAGTTCCTCCTCCTCCTGGTCTTCAGTAG 1653 0.5227 MTTLHGSAPSLRRRAEGCVPPEGSQFRSRLSLESHSWRRVRGRLIRADSYPSSDSSVEMSDELASTLASIQEFMAGVSRRLDQLESSRQDPHPAGVVTDETIPHASQTAQTRPPGVSLSTPFHLADHYETIPPPTITVSPPMVPTIGDTRLAEQEAKVERLESMMRQIRLQDGGLTWDDRDGIPAASLPAKFRMPDIERYSGIGCPKIHLRLYSTVMRAHGIDDAQLVTLFPMSLSGAAQRWFASVEPSRLCTWEDVAREFLTQFAFSADIDVSRQELEATRQRPDESISSFVTRWRAKVAGMIDRPKEQDQIDMVLRNLQSRFARRLVGIPFQDLRSLVHAAFSVEEAMARGLWTDTAASPDSKGKKLIGPLTRSGEVGAISYQHRRPAHHSAYRSPTVRAPFSLPQYQYQLDYAQEPYIAQTSMQPRPPHPRAATRPPLRPYAQRPPRQFTPLGMTLTRAFEKLRDAGVIVPLAPRPLPHPIPPHFRSHEHCLYHQIPGHDTEHCSALHHAIQDLIDSGVVDLARPSVTTNPLPAHSTHAVPPPPGLQ* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0274 550 Coils Coil 151 171 - -
Vvi19g0274 550 PANTHER CCHC-TYPE DOMAIN-CONTAINING PROTEIN 169 529 - -
Vvi19g0274 550 MobiDBLite consensus disorder prediction 424 452 - -
Vvi19g0274 550 Pfam Retrotransposon gag protein 230 320 IPR005162 -
Vvi19g0274 550 MobiDBLite consensus disorder prediction 432 447 - -
Vvi19g0274 550 MobiDBLite consensus disorder prediction 1 25 - -
Vvi19g0274 550 MobiDBLite consensus disorder prediction 529 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0274 Vvi-Chr19 2914881 2917363 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0274 - - vvi:104877558 1024.62