Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02943 ATGGAGGTTGAACCAGAGAATCTCCAGATTCCCGAAACCATTCTCTACACCACTCTCACTCCACTTCCTCTCGCCGCCGACGAATCCCTAGATTCCGACAACCACGGACAGTACTCCGTTTTCCGTAACGAAATCTCTCTCGACACGCCTCAAGTCGAATGCGTTCATTCCACCGCCCAAGATTTCTTCTCCCTCGATGTCGCCGGAGAAGACGAAGCCGAAGATACCCTCCCCGAGCCTGTTACGCCAGGTGAGCCGAAGAAATTGGCTCTTGAACTCGAGCCCAAGACGCCAGCGCTTGGGCCCGAGCCGACGATGGAGAGTGGTTGGTTTCGTGGGAATTGTAAATTCAGAAGCCCCATGCTTCAGCTTCATAAAGAGATAGTGGATTTTTGTGAATTTTTGTCACCTACTCCTGAAGAGAAAGCTAAACGTGACTCAGCGATAGAATCTGTGTTTGAAGTTATTAAGCATATCTGGCCTCATTGTCAGGTTGAAGTTTTTGGGTCTTTCAGGACAGGACTGTATCTTCCTACTAGTGATATTGATGTTGTGATTCTGAAATCATGCTTACCGAATCCACAAATTGGTTTGAATGCAATTTCTAAATCCTTGTCACAAAGGAGCATGGCTAAAAAGATACAGGTTATTGGAAAGGCTCGTGTGCCAATTATTAAATTCATTGAAAAGAGGAGTGGTCTTTCCTTTGATATAAGTTTTGACATAGAAAATGGACCCAAGGCTGCCGAGTATATTCAGGAAGCAGTGGCTAAGTGGCCACAACTGCGTCCGTTGTGTTTCATTTTGAAAGTATTTTTACAACAAAGAGAACTTAATGAGGTTTATTCTGGTGGAATTGGTTCCTATGCCCTCCTTACCATGCTTATGGCAGTGTTACGGAATGTCCGTCAGAGCCAAACTTCTACAGAGCACAACTTAGGGCTCCTTTTGGTACACTTTTTCGATTTTTATGGACGTAAATTGAATACCTCAGATGTCGGTGTATCTTGTAATGGAGTTGGCACCTTTTTCCGAAAGAGTAGTAAAGGGTTTTACAATAAAGGAAAGCCATTTCTTCTCGGCATTGAGGATCCACAGACTCCAGAGAATGACATTGGGAAGAGCTCCTTCAATTACTTTCAGGTTCGGTCAGCATTTTTAATGGCTTTCACGACTCTGACAAATCCCAAGGTCATCCTGAGCTTAGGACCCAACAGGAGCATTCTTGGCACTATAATTAGACCAGACCCTGTCTTGATGGAGCGTAAAGGGGGGTCAAATGGAGAAATAACTTTTAATAGTTTGCTTCCCGGTGCCGGTGAGCCAGTACAACAGCAGTTAGGAGAGAATGACATGTTGTGCAATTGGCAGTTAGATTATGAAGAAGAACCACTACCACGCGGAGATGGAGATAACAACACCGTTGCAGAGACCAGCAATTCGTCCAGAAAAAAGAGAAAATCCGCCTATAAGGACGAGAATAATAACAGTGAGAAGAAGCCAAAGGAAAACGGGCATTCTCGGAGAGTCAAGAATGAGGAGAATGGTGCTCTGACAGAAAACGGTGTACATAAGAAACATAAGAAGAAACGGGGTAAACATTTTAGATTTAGATCAGACGCCAGCTACTAA 1632 0.4424 MEVEPENLQIPETILYTTLTPLPLAADESLDSDNHGQYSVFRNEISLDTPQVECVHSTAQDFFSLDVAGEDEAEDTLPEPVTPGEPKKLALELEPKTPALGPEPTMESGWFRGNCKFRSPMLQLHKEIVDFCEFLSPTPEEKAKRDSAIESVFEVIKHIWPHCQVEVFGSFRTGLYLPTSDIDVVILKSCLPNPQIGLNAISKSLSQRSMAKKIQVIGKARVPIIKFIEKRSGLSFDISFDIENGPKAAEYIQEAVAKWPQLRPLCFILKVFLQQRELNEVYSGGIGSYALLTMLMAVLRNVRQSQTSTEHNLGLLLVHFFDFYGRKLNTSDVGVSCNGVGTFFRKSSKGFYNKGKPFLLGIEDPQTPENDIGKSSFNYFQVRSAFLMAFTTLTNPKVILSLGPNRSILGTIIRPDPVLMERKGGSNGEITFNSLLPGAGEPVQQQLGENDMLCNWQLDYEEEPLPRGDGDNNTVAETSNSSRKKRKSAYKDENNNSEKKPKENGHSRRVKNEENGALTENGVHKKHKKKRGKHFRFRSDASY 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02943 543 MobiDBLite consensus disorder prediction 463 543 - -
Vifa1g02943 543 Pfam Nucleotidyltransferase domain 151 252 IPR002934 GO:0016779
Vifa1g02943 543 PANTHER POLY(A) RNA POLYMERASE 113 489 IPR045862 GO:0043631|GO:1990817
Vifa1g02943 543 MobiDBLite consensus disorder prediction 480 522 - -
Vifa1g02943 543 CDD NT_PAP_TUTase 144 254 - -
Vifa1g02943 543 Gene3D Beta Polymerase, domain 2 137 245 IPR043519 -
Vifa1g02943 543 SUPERFAMILY PAP/OAS1 substrate-binding domain 260 399 - -
Vifa1g02943 543 Pfam Cid1 family poly A polymerase 312 370 IPR002058 -
Vifa1g02943 543 Gene3D - 121 395 - -
Vifa1g02943 543 FunFam non-canonical poly(A) RNA polymerase PAPD5 137 245 - -
Vifa1g02943 543 FunFam Poly(A) RNA polymerase cid14 239 395 - -
Vifa1g02943 543 SUPERFAMILY Nucleotidyltransferase 118 272 IPR043519 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02943 Vifa-Chr1 458463226 458468643 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02943 K03514 - gmx:100811320 733.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02943 1 458463226 458468643 Vifa1g02943 1 458463226 458468643 ECH