Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1550 ATGGCGGAGCAGGACCACCCTCCGTTCCCCGAAACTTTCCTCTATGAAACCCTTAGTCCCATCTCTTTCTCGGCCGCCGCCGACGACGACGACAACAACARCAACGAGTCCTACTCTGTCTTCCGCAATGAGATATCCCTCTCTGAAATTCCATCCACCRTTCCAGGTTCCGCTACTATCGATTTCTTCTCTCTYGACGTCGCCGAAGAGACCTGCGATCGGGACTCTCTCCCGCCGCCGATCGTCGTGGCGGAGGAGCCCAAGACGCCAGCACTCGCACCCGAGCCGAAGCTCGAGAGCAGTTGGTTTCGCGGAAACTGCAAGTTCAGGAGCCCCATGCTTCAACTGCATAAAGAGATAGTGGATTTTTGTGAGTTTTTGTCTCCAACATCTGAAGAGAAAGCTGCACGGGACACGGCAATAGAATCTGTGTTCGATGTTATAAAGCACATATGGCCCCATTGCCAGGTAGAAGTCTTTGGATCTTATAGGACTGGGCTGTATCTTCCGACTAGTGATATTGATGTTGTGATTTTGAAGTCAGGCTTGCCAAATCCACAGCTTGGCTTGAATGCACTTTCTAGAGCATTGTCACAAAGGAGCATGGCTAAAAAGATACAGGTGATTGGAAAGGCTCGTGTACCAATTATTAAATTTGTTGAAAAGAAAAGTGGGCTTGCATTTGATGTAAGTTTTGACCTTGACAATGGACCCAAAGCTGCCGAGTATATTCAGGAGGCAGTGGCTAGGTGGCCCCCACTTCGGCCATTATGTTTGATCTTGAAAGTGTTTTTGCAACAGAGAGAGCTAAATGAGGTATATTCTGGTGGTATTGGTTCTTATGCCCTCCTTGCCATGCTGATGGCAATGCTGCGGAATCTACGCGAGACTCAAGCTTCTGCCGAGCACAATTTAGGGGTCCTTTTGGTGCATTTTTTCGATTTCTATGGACGCAAGTTGAACACTACAGATGTTGGTGTGGCTTGTAATGGGGCAGGAATCTTTTTTTCGAAGAGTAGTAAGGGGTTCTTAAACAAAGGACGGCCATTTCTTATTGGCATTGAGGACCCACAGGCACCGGAGAACGACATTGGAAAGAACTCCTTCAATTATTTCCAGATTAGATCCGCATTTTCAATGGCTTACACAACTTTGACAAACACCAAGACCATCATGAACCTGGGGCCCAGCAGGAGCATTCTTGGTACTATAATTAGACCGGACTCCGTGTTGCTGGAGCGCAAAGGAGGGTTTAATGGGGATGTGACTTTCGATAGCTTGCTTCCTGGTGCCGGTGAGCCTTTGGAGGAACAATATGGAGAGCAAGATATGTTATACAATTGGCAGTTCGATTATGAAGAAGAACCGCTGCCACGGGGCAATGATGATGGTGCAGAGCCTAGCACCCGCTCTTCAACAAGGAAGAGGAAATCGTCATCTAAGGAGAAATCAAGTAAGAAGGTCAAGGAAAACGGAGAGTATAAAAAGGTCAGGAATGAGGAGAGTGGCTCGAGGAAAGAGAATGGTGATCTAAAGAAGCATAGGAGAAAACAATGGTGA 1560 0.4731 MAEQDHPPFPETFLYETLSPISFSAAADDDDNNXNESYSVFRNEISLSEIPSTXPGSATIDFFSLDVAEETCDRDSLPPPIVVAEEPKTPALAPEPKLESSWFRGNCKFRSPMLQLHKEIVDFCEFLSPTSEEKAARDTAIESVFDVIKHIWPHCQVEVFGSYRTGLYLPTSDIDVVILKSGLPNPQLGLNALSRALSQRSMAKKIQVIGKARVPIIKFVEKKSGLAFDVSFDLDNGPKAAEYIQEAVARWPPLRPLCLILKVFLQQRELNEVYSGGIGSYALLAMLMAMLRNLRETQASAEHNLGVLLVHFFDFYGRKLNTTDVGVACNGAGIFFSKSSKGFLNKGRPFLIGIEDPQAPENDIGKNSFNYFQIRSAFSMAYTTLTNTKTIMNLGPSRSILGTIIRPDSVLLERKGGFNGDVTFDSLLPGAGEPLEEQYGEQDMLYNWQFDYEEEPLPRGNDDGAEPSTRSSTRKRKSSSKEKSSKKVKENGEYKKVRNEESGSRKENGDLKKHRRKQW* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1550 519 PANTHER INACTIVE NON-CANONICAL POLY(A) RNA POLYMERASE PROTEIN TRF4-2-RELATED 96 513 - -
Amo18g1550 519 CDD NT_PAP_TUTase 136 246 - -
Amo18g1550 519 Pfam Nucleotidyltransferase domain 145 240 IPR002934 GO:0016779
Amo18g1550 519 Gene3D Beta Polymerase, domain 2 129 237 IPR043519 -
Amo18g1550 519 PANTHER POLY(A) RNA POLYMERASE 96 513 IPR045862 GO:0004652|GO:0031499|GO:0043631
Amo18g1550 519 Gene3D - 113 387 - -
Amo18g1550 519 SUPERFAMILY PAP/OAS1 substrate-binding domain 252 390 - -
Amo18g1550 519 MobiDBLite consensus disorder prediction 450 519 - -
Amo18g1550 519 SUPERFAMILY Nucleotidyltransferase 108 264 IPR043519 -
Amo18g1550 519 Pfam Cid1 family poly A polymerase 304 362 IPR002058 -
Amo18g1550 519 MobiDBLite consensus disorder prediction 483 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1550 Amo-Chr18 30326144 30332041 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1550 K03514 - gmx:100811320 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1550 18 30326144 30332041 Amo18g1550 18 30326144 30332041 ECH