Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1142 ATGGAGGAGCAAGAGCAGAAGATCCCCGAAACCTTCGTCTACGAAACTCTCAGTCCCCTCGCTCTCTCCGCCGCCGATTCCTCGGTCTCCGACCACCGCGAACCCTACTCCGTTTTCCGCAACGAGATTTCCCTCGACACGCCCCAATGCGCCTCGACCACCTCCACCGCCCCCGAATTCTTCTCCCTCGACGTTGCCGCCGCCGAGGCCTCCTGCTGCGACTCCCTCGCCGAGTCGCTAGCCGCCCCTGCCGAGCCGATGACGCTGGCTCCCGTGCCCGAGCCAAAGCTCGAGAGCGGCTGGTTCCGCGGGAATTGCAAATTCAGGAGCCCCATGCTTCAGCTCCATAAAGAGATAGTGGATTTTTGTGAGTTTTTGTCACCGACTGCAGAAGAGAAGGCTGCACGAGACATGGCGATAGAATCTGTGTTTGGAGTTATAAAGCATATATGGCCTCACTGCCAGGTGGAAGTGTTTGGGTCTTTCAGGACAGGGCTGTATCTTCCGACCAGTGATATCGATGTTGTGATTCTGAAATCAGGCTTGCCGAATCCACAGATTGGCTTGAATGCAATTTCTAAAGCCTTGTCGCAAAGGGGCATGGCAAAAAAGATTCAGGTCATTGGAAAGGCTCGTGTGCcgattattaaatttgttgaaaagagAAGTGGTGTTGCATTTGATATAAGTTTTGACATAGACAATGGACCCAAAGCGGCTGAGTATATCCagGAAGCAGTGGTTAAGTGGCCACCACTAAGGCCCTTGTGTTTGATTTTGAAAGTATTTTTGCAGCAAAGAGAACTAAATGAGGTATATTCTGGTGGGATTGGTTCTTATGCCCTCCTTACCATGCTGATGGCAATGTTGCGGAATCTTTGCCTGAGCCAAGCTTCTGCAGAGCACAACCTTGGAGTCCTTTTGGTGCATTTTTTTGATTTCTATGGACGCAAATTGAACACCTCAGATGTTGGCGTGTCTTGTAATGGGGCAGGCACCTTTTTCGTGAAGAGTAGTAAAGGGTTTTCAACCAAAGGACGACCAAGTCTTATTGCCATTGAGGATCCACAGGCACCAGAGAATGACATTGGGAAGAACTCCTTTAATTACTTCCAGGCATGTCATATTGATGAAAGCTGCAATTTTGTGGAAGGCATGATTATAATCCTTATGCAGGACCCACTATTTGTTAATGCTTACCATATATTTTGCCTTCCATCTAAATTAGGTCAGCTTTTTCAATGGCTTTCAAAAATTTGA 1260 0.477 MEEQEQKIPETFVYETLSPLALSAADSSVSDHREPYSVFRNEISLDTPQCASTTSTAPEFFSLDVAAAEASCCDSLAESLAAPAEPMTLAPVPEPKLESGWFRGNCKFRSPMLQLHKEIVDFCEFLSPTAEEKAARDMAIESVFGVIKHIWPHCQVEVFGSFRTGLYLPTSDIDVVILKSGLPNPQIGLNAISKALSQRGMAKKIQVIGKARVPIIKFVEKRSGVAFDISFDIDNGPKAAEYIQEAVVKWPPLRPLCLILKVFLQQRELNEVYSGGIGSYALLTMLMAMLRNLCLSQASAEHNLGVLLVHFFDFYGRKLNTSDVGVSCNGAGTFFVKSSKGFSTKGRPSLIAIEDPQAPENDIGKNSFNYFQACHIDESCNFVEGMIIILMQDPLFVNAYHIFCLPSKLGQLFQWLSKI 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1142 419 SUPERFAMILY PAP/OAS1 substrate-binding domain 251 373 - -
Ssu8g1142 419 Gene3D Beta Polymerase, domain 2 128 236 IPR043519 -
Ssu8g1142 419 SUPERFAMILY Nucleotidyltransferase 110 263 IPR043519 -
Ssu8g1142 419 Pfam Nucleotidyltransferase domain 147 244 IPR002934 GO:0016779
Ssu8g1142 419 Pfam Cid1 family poly A polymerase 303 361 IPR002058 -
Ssu8g1142 419 Gene3D - 112 371 - -
Ssu8g1142 419 PANTHER POLY(A) RNA POLYMERASE 96 372 IPR045862 GO:0004652|GO:0031499|GO:0043631
Ssu8g1142 419 CDD NT_PAP_TUTase 135 245 - -
Ssu8g1142 419 PANTHER INACTIVE NON-CANONICAL POLY(A) RNA POLYMERASE PROTEIN TRF4-2-RELATED 96 372 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1142 K03514 - gmx:100811320 639.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1142 8 20308082 20314178 Ssu8g1142 8 20308082 20314178 ECH