Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01092 ATGGAGGAAGAGCAAGACCACAAGTTTCCCGAAACCTTCGTCTATGAAACTCTCAGTCCCCTCGCTCTCTCCGCCGCCGATTCCCCCGTCTCCGACCACCACGAGCCGTATTCCGTTTTTCGCAACGAGATTTCCCTCGACACGCCCCAATGCGCCTCGGCCAACTCCACCGCCGTCGATTTCTTCTCCCTCGACGTCGCCGCCGAGGCCTCCGGCCGCGACTCCCTCCCCGAGCCGCCGCTCGCCACCCCCGAGCCGAAGATGCCGGCTCTCGCGCTCGAGCCGAAGCTGGAGAGCATCTGGTTCCGCGGGAATTGCAAATTCAGGAGCCCCATGCTTCAGCTGCATAAAGAGATAGTGGATTTTTGTGATTTTTTGTCACCAACTGCTGAAGAGAAAGCTTCACGGGACTTGGCGGTAGAGTCTGTGTTTGGAGTTATAAAACATATATGGCCTCACTGCCAGGTGGAAGTGTTTGGGTCATTCAGGACAGGGCTGTATCTCCCAACAAGTGATATTGATGTTGTGATTTTGAAAGCAGGCTTGCCAAATCCACAGATGGGCTTGAATGCAATTTCCAAGGCCTTATCACAAAGGGGCATGGCTAAAAAGATTCAGGTCATTGGAAAGGCTCGTGTGCCGATTATTAAATTTGTTGAAAAGAGGAGTGGTGTTGCATTTGATATAAGTTTTGACATAGACAATGGACCCAAAGCAGCTGAGTATATCCAGGAGGCAGTGGTCAAGTGGCCACCACTGAGGCCCTTGTGTTTGATTTTGAAAGTATTTTTGCAGCAAAGAGAACTAAATGAGGTATATTCTGGTGGGATTGGTTCTTATGCTCTCCTTGCCATGCTGATGGCAATGTTGCGGAATCTTCGCCTGAGCCAAGTTTCTGCAGAGCACAACCTGGGATTCCTTTTGGTGCAATTTTTTGATTTCTATGGACGGAAATTAAACACCTCAGATGTTGGTGTGTCTTGTAATGGGGCAGGCGCCTTTTTTGTGAAGAGTAGCAAAGGGTTTTTAAACAAAGGACGACCATGTCTTATTTCCATCGAGGATCCACAGgcaccagagaatgacattgggaagaactcttataattatttccagATTAGGTCAGCTTTTTCAATGGCTTTCAAAAATTTGACAGATCCCAAGACCATCATGAACTTGGGACCGAACAGGAGCATCCTGGGCACTATTATTAGACCAGATCCTGTCTTGCTGGAGCGTAAAGGGGGATTAAACGGGGATGTGAGTTTTGATAGCTTGCTTCCTGGTGCTGGTGAGGCATTAGAACAACAGTATGGGGAGCAGGATATGTTATGTAATTGGCAGTTAGATTATGAAGAAGAGCCACTACCACGGGGGGAATTCACTAGTGCAGAGCCAAGCACACGTTCTTCAACAAAGAAGAGAAAATCTTCAAAGAAATCTAGTAAGAAGCTAAAGGAAAATGGGGATCTTGGAATGGCGGGGAATGAGGAGAATGATAATAGAAAAGAAAACAGTATAAAAAAGAAGAAAAAGAGAAAAACACACCTATTTGACAGCGGAACGAGGCAGTATAAGCGTAAAAGCAAATTTGAGTCCAATGTCACACCACCCAAGAGAAGTGAAGCTACCAACTCTAGAGACCGGGCACCATTGTAA 1659 0.4605 MEEEQDHKFPETFVYETLSPLALSAADSPVSDHHEPYSVFRNEISLDTPQCASANSTAVDFFSLDVAAEASGRDSLPEPPLATPEPKMPALALEPKLESIWFRGNCKFRSPMLQLHKEIVDFCDFLSPTAEEKASRDLAVESVFGVIKHIWPHCQVEVFGSFRTGLYLPTSDIDVVILKAGLPNPQMGLNAISKALSQRGMAKKIQVIGKARVPIIKFVEKRSGVAFDISFDIDNGPKAAEYIQEAVVKWPPLRPLCLILKVFLQQRELNEVYSGGIGSYALLAMLMAMLRNLRLSQVSAEHNLGFLLVQFFDFYGRKLNTSDVGVSCNGAGAFFVKSSKGFLNKGRPCLISIEDPQAPENDIGKNSYNYFQIRSAFSMAFKNLTDPKTIMNLGPNRSILGTIIRPDPVLLERKGGLNGDVSFDSLLPGAGEALEQQYGEQDMLCNWQLDYEEEPLPRGEFTSAEPSTRSSTKKRKSSKKSSKKLKENGDLGMAGNEENDNRKENSIKKKKKRKTHLFDSGTRQYKRKSKFESNVTPPKRSEATNSRDRAPL 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01092 552 Gene3D Beta Polymerase, domain 2 128 236 IPR043519 -
Cca10g01092 552 PANTHER POLY(A) RNA POLYMERASE 93 527 IPR045862 GO:0004652|GO:0031499|GO:0043631
Cca10g01092 552 MobiDBLite consensus disorder prediction 483 505 - -
Cca10g01092 552 CDD NT_PAP_TUTase 136 245 - -
Cca10g01092 552 SUPERFAMILY Nucleotidyltransferase 110 263 IPR043519 -
Cca10g01092 552 SUPERFAMILY PAP/OAS1 substrate-binding domain 251 389 - -
Cca10g01092 552 MobiDBLite consensus disorder prediction 518 535 - -
Cca10g01092 552 Gene3D - 112 385 - -
Cca10g01092 552 PANTHER INACTIVE NON-CANONICAL POLY(A) RNA POLYMERASE PROTEIN TRF4-2-RELATED 93 527 - -
Cca10g01092 552 Pfam Cid1 family poly A polymerase 303 361 IPR002058 -
Cca10g01092 552 MobiDBLite consensus disorder prediction 458 552 - -
Cca10g01092 552 Pfam Nucleotidyltransferase domain 147 244 IPR002934 GO:0016779
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01092 K03514 - gmx:100811320 840.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01092 10 13829512 13837968 Cca10g01092 10 13829512 13837968 ECH