Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04405 ATGGAGGTTGATCAAGAAAATCTTCAGATTCCGGAAACCATTGTCTACAACACCCTCAGTCCACTTCCTCTCACCACCGATGATTCCCCAGATTCCAACAACAACGAACAATACTCCGTTTTCCGTAACGAAATTTCTCTCGACACTCCCCAAGTCGATTCTGTTTATTCAACTGCCCCTGATTTCTTCTCTCTCGATGTCGCCGATGAAGCCGAACCCGAACCTGAACCCGGAAACCCCCTCCCCGAGCCTGTCACGCCGGTTGAGCCAAAGACGCCGGCTATTGAACATGAGGCGACACTTGAAGGTGGTTGGTTTCGTGGGAATTGCAAATTCAGAAGCCCCATGCTTCAGCTTCATAAAGAGATAGTggatttttgtgagtttttgtCACCTACTCCAGAAGAGAAAGCTAAACGTGATGCAGCAATAGAATCTGTTTTTGAAGTTATAAAACATATATGGCCTCATTGTCAGGTTGAAATTTTTGGGTCTTTCAGGACAGGACTGTACCTTCCAACTAGTGATATTGATGTTGTGATTCTGAAATCAGGCTTACCGAATCCGCAGATTGGTTTGAATGCAATTTCTAGATCATTGTCACAGAGAAGTATGGCAAAAAAGATACAGGTTATTGGAAAGGCTCGCGTGCCAATtattaaattcattgaaaagaAGAGTGGTCTTTCCTTTGATATAAGTTTTGATATAGACAATGGACCTAAAGCTGCCGAGTATATTCAGGAAGCAGTGGCTAAGTGGCCTCAACTACGGCCgttgtgtttgattttgaaagtaTTTTTACAACAAAGAGAACTTAATGAGGTATATTCTGGTGGGATTGGTTCGTATGCTCTCCTTACCATGCTGATGGCGATGTTACGGAATGTTCGTCAGAGCCAACCTACTGCAGAGCACAACTTAGGGGTCCTTTTGgtacatttttttgatttttatggaCGTAAATTAAATACCTCAGATGTTGGTGTATCGTGTATTGGAGAAGGCACCTTTTTCAAAAAGAGTAGTAGAGGGTTTTACAACAAAGCACGGCCATTTCTTCTCGGCATTCAGGATCCTCAGACTCCAGATAATGACATTGGGAAGAACTCCTTCAATTACTTCCAGGTTAGGTCAGCATTTTTAATGGCTTTCACAACTTTGACAAATCCCAAGGTCATCCTGAGCTTAGGACCTAACAGGAGCATTCTTGGCACGATAATTAGACCAGACCCTGTCTTGATGGAGCGTAAAGGCGGGTCGAACGGAGAGATGACCTTTAATAGTTTGCTTCCTGGTGCTGGTGAGCCAATACAACAGCAGTATGGAGAAAACGATATGTTATGCAATTGGCAgttagattttgaagaagaacCGCTACCACGCGGAGATGGAGAAAACACCGGTGCAGAGCCCAGCACGGGCTCTTCCAGGAAAAAGAGAAAATCTGCATCTAAGGAGAATAAGGAAAACAGGGACTCTCGCAAGAATAAGGAAAATGGCTCTATGACAGAAAACGGTGTACATAAGAAACATAAGAAAAAACGGGCTAAACATATTAGGTCGGGGGCCAGTTGCTGA 1581 0.4168 MEVDQENLQIPETIVYNTLSPLPLTTDDSPDSNNNEQYSVFRNEISLDTPQVDSVYSTAPDFFSLDVADEAEPEPEPGNPLPEPVTPVEPKTPAIEHEATLEGGWFRGNCKFRSPMLQLHKEIVDFCEFLSPTPEEKAKRDAAIESVFEVIKHIWPHCQVEIFGSFRTGLYLPTSDIDVVILKSGLPNPQIGLNAISRSLSQRSMAKKIQVIGKARVPIIKFIEKKSGLSFDISFDIDNGPKAAEYIQEAVAKWPQLRPLCLILKVFLQQRELNEVYSGGIGSYALLTMLMAMLRNVRQSQPTAEHNLGVLLVHFFDFYGRKLNTSDVGVSCIGEGTFFKKSSRGFYNKARPFLLGIQDPQTPDNDIGKNSFNYFQVRSAFLMAFTTLTNPKVILSLGPNRSILGTIIRPDPVLMERKGGSNGEMTFNSLLPGAGEPIQQQYGENDMLCNWQLDFEEEPLPRGDGENTGAEPSTGSSRKKRKSASKENKENRDSRKNKENGSMTENGVHKKHKKKRAKHIRSGASC 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04405 526 SUPERFAMILY Nucleotidyltransferase 114 267 IPR043519 -
Tsu02g04405 526 Gene3D - 116 390 - -
Tsu02g04405 526 Pfam Nucleotidyltransferase domain 146 247 IPR002934 GO:0016779
Tsu02g04405 526 Gene3D Beta Polymerase, domain 2 132 240 IPR043519 -
Tsu02g04405 526 SUPERFAMILY PAP/OAS1 substrate-binding domain 255 394 - -
Tsu02g04405 526 MobiDBLite consensus disorder prediction 70 90 - -
Tsu02g04405 526 Pfam Cid1 family poly A polymerase 307 365 IPR002058 -
Tsu02g04405 526 PANTHER POLY(A) RNA POLYMERASE 105 516 IPR045862 GO:0004652|GO:0031499|GO:0043631
Tsu02g04405 526 PANTHER INACTIVE NON-CANONICAL POLY(A) RNA POLYMERASE PROTEIN TRF4-2-RELATED 105 516 - -
Tsu02g04405 526 MobiDBLite consensus disorder prediction 475 507 - -
Tsu02g04405 526 MobiDBLite consensus disorder prediction 508 526 - -
Tsu02g04405 526 MobiDBLite consensus disorder prediction 75 89 - -
Tsu02g04405 526 MobiDBLite consensus disorder prediction 457 526 - -
Tsu02g04405 526 CDD NT_PAP_TUTase 139 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04405 Tsu-Chr2 52840403 52847903 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04405 K03514 - gmx:100811320 740.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04405 02 52840403 52847903 Tsu02g04405 02 52840403 52847903 ECH