Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0278 ATGATAAAACACCGGTATTGTAAAAAAGGCACAGACCCAACGCTGTTTTGTATTTATCTTAAGTTATTATGGCAGGCGGTGGTGTCTAACCTTGCGGACAACAATATGATGGTCATACTAGACAGTCACTTCAGCGAGCCCAGCTTCCATGACAATGGCGTCTTTGGCGACCAGCACTTCAATCCAGACTTGTGGGTCAAGGGCCTCACCCGGATTGCCACCATGTTCAGCGGTGTCCCTAATGTGGTGGGCATGAGCTTGAGGAATGAGCTCCGATGCCCCAATCAGAATGTGAAGGACTGGTACAGGTACATGCAGAAAGGAGCTGAAGCAGTGCACTCAGCCAACCCAGATGTTCTGGTCATAATCTCTGGCTTGAGTGATGGTACAGACCTATCTTTCCTCCTCAATCAACAGCTGGAATTGACATTCACAGGGAAATTAGTGTTGGAGATGCATTGGCATGGATCGCGGGTTGGGAGGGCTGGGGAAACCAGCAACCCCAACAAGGTGTGCGGGAGAGTGGTGGACAGCATAATGAGGAGAGGAGGGGTTCTGCTACAGCAAGGATGGCCATTAATGTTTGTGAGTGAGCTTGGGGTGGATGACAACAGGCACTTAAATTGCTTCTTTGGCCTGGCAGCTGAACTGGACTTCGATTGGGCATTGTGGACACTGGAAGAGACTAATGGGTTAATGAATTGGAACTCAAGCTTCTTCCAGAGGATTTCAGCCCTCCAATCTCCTTTGCAAGGGCCAGATGTATCCCGAGTCAGACGACATAAAATAATCTTCCATCCTTCGACTGGTCTTTGCATTCTAAGGGAATCAGGGTCTGAACCATTAAAGCTAGGTCCCTGCACCAAGTCAGAAGCTTGGGGCTACACCCCCCAAAAGTTGTTGACAGTGAAGGGAACATACTTCTGCCTTCAAGCAGTTGGGCTAGGGAAGCCTGCAAAACTCAGTATAATATGCACTAAACCTGGGTCAAATTGGGAGAACATTTCAGATTCAAAGATGTACCTGTCAACTAAGCTGGGGGATGGCACCCGTGTTTGCTTGGATGTAGACTCCAGCAGCACCATTGTCACAGATGCCTGCAAGTGTTTGGGTAGAGGTGATATGTGTGATCCTGGGAGCCAGTGGTTCAAGGTTGTTGACAGCACAAATATTACAAGAAGACCTATTCTTCAGATCGGCTAG 1203 0.4846 MIKHRYCKKGTDPTLFCIYLKLLWQAVVSNLADNNMMVILDSHFSEPSFHDNGVFGDQHFNPDLWVKGLTRIATMFSGVPNVVGMSLRNELRCPNQNVKDWYRYMQKGAEAVHSANPDVLVIISGLSDGTDLSFLLNQQLELTFTGKLVLEMHWHGSRVGRAGETSNPNKVCGRVVDSIMRRGGVLLQQGWPLMFVSELGVDDNRHLNCFFGLAAELDFDWALWTLEETNGLMNWNSSFFQRISALQSPLQGPDVSRVRRHKIIFHPSTGLCILRESGSEPLKLGPCTKSEAWGYTPQKLLTVKGTYFCLQAVGLGKPAKLSIICTKPGSNWENISDSKMYLSTKLGDGTRVCLDVDSSSTIVTDACKCLGRGDMCDPGSQWFKVVDSTNITRRPILQIG* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0278 400 SUPERFAMILY (Trans)glycosidases 25 232 IPR017853 -
Vvi19g0278 400 Gene3D Glycosidases 19 249 - -
Vvi19g0278 400 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 22 389 - -
Vvi19g0278 400 CDD RICIN 262 382 IPR000772 -
Vvi19g0278 400 SUPERFAMILY Ricin B-like lectins 258 367 IPR035992 -
Vvi19g0278 400 Pfam Cellulase (glycosyl hydrolase family 5) 25 226 IPR001547 GO:0004553|GO:0071704
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0278 Vvi-Chr19 2952274 2953798 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0278 12 396 Glycoside Hydrolase AT1G13130 46.539 1.33e-121 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0278 - - vvi:100253729 784.637