Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01013 ATGGAGGAGCAGTCACTGAATATTCCCGAAACCTTCGTGTACGACACTCTCAGTCCCCTCGCTCTATCCGCCGCCGATTTCCAATTTCCCGATAACGGCGAATCCTACTCCGTTTTCCGCAACGAGATTTCAGTCGATACCCCCCAACTCGCCTCTCCCACCTCCACCACCATCGATTTCTTCTCCCTCGACGTTGCTTCCGAGGCCCACGGCGGCGTCTCCCACCCAGAGCCGCTCGCCGCAGCGCCAGAACCAAAGACGCCGACTCCTGCGCCAGAGCCGAAGCTCGAGACTGTCTGGTTCGGCGGGAATTGCAAATTTAAGAGTCCAATGATTCAGCTGCATAAAGAGATAGTGGATTTTTGTGAGTTTTTGTCACCAACTGTTGAAGAGAAAGCTGCACGGGATATGGCAATAGAATCCGTGTTTGGAGTTATAAAACACATATGGCCTCATTGTCGGGTGGAAGTATTTGGGTCTTTCAGGACAGGGCTGTATCTTCCCACCAGTGATATTGACGTTGTGATTCTGAAATCAGGCTTGCCAAATCCACAGATTGGACTGAATGCAATTTCTAAAGCATTGTCCCAAAGGAACATGGCTAAAAAGATTCAGGTCATTGGAAAGGCGCGGGTACCAATTATTAAATTTGTTGAGAGGAAGAGTGGTCTTGCATTTGATATAAGTTTTGACATTGACAATGGACCCAAAGCGGCTGAGTATATTCAGGAAGCAGTACTTAAGTGGCCACCTCTAAGGCCCTTGTGTTTGATTTTGAAAGTATTTCTGCAGCAAAGAGAGCTAAATGAGGTATATTCTGGTGGGATTGGCTCGTATGCCCTTCTTGCCATGCTGATGGCAATGTTGCGGAATCTTCGCCTGAGCCAAGCTTCTGAGCACAACCTGGGAGTCCTTTTGGTGCATTTTTTTGATTTCTATGGACGCAGATTGAACACATCAGATGTTGGTGTGTCCTGTAATGGGACAGGCACTTTTTTTGTGAAAAGTAGTAAAGGGTTTTTAAACAAATCACGGCCAAGTCTTATTTCCATCGAGGATCCTCAGGCACCAGAAAATGACATTGGGAAGAACTCTTTTAATTATTTCCAGATTAGGTCAGCTTTTTCAATGGCATTTAAAAATTTGACGAATCCCAAGATCATTATGAGCTTAGGACCGAACAGGAGCATTCTGGGGACTATAATCAGACCAGATCCTGTTCTGCTGGAGCGTAAAGGTGGCTTGAACGGGGATGTGACTTTTGATAAGTTGCTTCCTGGTGCTGGCGAGCCATTACAACAACAGTATGGAGAACAGGAGATGTTATGCAATTGGCAGTTAGATTATGAAGAAGAACCATTACCACGGGGAGGCGACGCCAGTGCAGAGCCTAGCTCACGTTATTCAGCAAAGAAGAGAAAATCTGGTTCAAAGAATTCTAGTAAGAAGCTAAAGGAAAAGGAAAATGATAATATTCAGATGAAAGGGAATGAGGATAATGACTCTAGAAAAGAGAAGGATAAGAAAAAGAGACGAAAGAGAAAAGCTCAACTAGAATACAGCGGTTCTTAG 1572 0.4523 MEEQSLNIPETFVYDTLSPLALSAADFQFPDNGESYSVFRNEISVDTPQLASPTSTTIDFFSLDVASEAHGGVSHPEPLAAAPEPKTPTPAPEPKLETVWFGGNCKFKSPMIQLHKEIVDFCEFLSPTVEEKAARDMAIESVFGVIKHIWPHCRVEVFGSFRTGLYLPTSDIDVVILKSGLPNPQIGLNAISKALSQRNMAKKIQVIGKARVPIIKFVERKSGLAFDISFDIDNGPKAAEYIQEAVLKWPPLRPLCLILKVFLQQRELNEVYSGGIGSYALLAMLMAMLRNLRLSQASEHNLGVLLVHFFDFYGRRLNTSDVGVSCNGTGTFFVKSSKGFLNKSRPSLISIEDPQAPENDIGKNSFNYFQIRSAFSMAFKNLTNPKIIMSLGPNRSILGTIIRPDPVLLERKGGLNGDVTFDKLLPGAGEPLQQQYGEQEMLCNWQLDYEEEPLPRGGDASAEPSSRYSAKKRKSGSKNSSKKLKEKENDNIQMKGNEDNDSRKEKDKKKRRKRKAQLEYSGS 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01013 523 Pfam Cid1 family poly A polymerase 301 359 IPR002058 -
Vian11g01013 523 CDD NT_PAP_TUTase 134 244 - -
Vian11g01013 523 Gene3D - 110 384 - -
Vian11g01013 523 MobiDBLite consensus disorder prediction 481 506 - -
Vian11g01013 523 Pfam Nucleotidyltransferase domain 146 242 IPR002934 GO:0016779
Vian11g01013 523 SUPERFAMILY PAP/OAS1 substrate-binding domain 250 389 - -
Vian11g01013 523 SUPERFAMILY Nucleotidyltransferase 109 262 IPR043519 -
Vian11g01013 523 FunFam non-canonical poly(A) RNA polymerase PAPD5 127 235 - -
Vian11g01013 523 PANTHER POLY(A) RNA POLYMERASE 94 510 IPR045862 GO:0043631|GO:1990817
Vian11g01013 523 FunFam Poly(A) RNA polymerase cid14 229 384 - -
Vian11g01013 523 MobiDBLite consensus disorder prediction 69 93 - -
Vian11g01013 523 Gene3D Beta Polymerase, domain 2 127 235 IPR043519 -
Vian11g01013 523 MobiDBLite consensus disorder prediction 453 523 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01013 K03514 - gmx:100811320 794.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g01013 11 13495011 13500399 Vian11g01013 11 13495011 13500399 ECH