Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06106 ATGGAGGAGCAGGACCAACCGCCGATTCCCGAAACTTTCGTCTACGAAACTCTCAGCCCAATTTCTCTCACCTCCTCCGCCGCCGGCGCCGCCGACTCCCCAGTTTCCGACCACGTCGAACCCTACTCCGTTTTCCGCAACGAAATCTCTCTCTCCACGGTCCAATGCGCTTCCCCCGAATCCGCCGCCCAAGATTTCTTCTCCCTCGACGTCGCCGGCGAAGACTCCTCCGGCCGAGACCCCCTCCCCGAGCCGGTCACGCCGGCCCAGCCGAAGATGCCGGCTCTTGCTCCCGAGCCTAAGCTCGAGAGCGGTTGGTTTCGCGGGAACTGCAAATTCAGAAGCCCCATGCTTCAACTGCATAAAGAAATAGTGGATTTTTGTGAATTTTTGTCACCTACTCTAGAAGAGAAAGCTGAACGCAATATGGCTATAGAATCTGTATCTGAAGTAATAAAACATATATGGCCTCACTGCCAGGTAGAAGTCTTTGGGTCTTTCAGGACAGGGCTGTATCTTCCAACCAGTGATATTGATGTTGTGATTCTGAAGTCAGGCTTACCAAATCCGCAAATTGGTTTGAATGCTATTTCTAGAGCATTGTCACAAAAGGGCATGGCTAAAAAGATACAGGTCATTGGAAAGGCTCGTGTGCCAATTATTAAATTTGTCGAAAAGAGGAGTGGTGTTGCATTTGATATAAGTTTTGACATAGATAATGGACCCAAAGCTGCGGAGTATATTCAGGAAGCAGTGGCTAAGTGGCCACCCCTGCGGCCGTTGTGTTTGATTTTGAAAGTATTTTTGCAACAAAGAGAACTTAATGAGGTATATTCTGGTGGGATTGGTTCTTATGCCCTCCTTGCCATGCTGATGGCAATGTTGCGGAATCTCCGTCAGAGTCAAGCTTCAGCAGAGCATAACTTGGGGGTCCTTTTGGTACATTTTTTTGATTTCTATGGACGTAAATTAAACACTTCAGATGTTGGTGTATCTTGTAATGGGGCAGGCACCTTTTTCCTAAAGAGTAGTAAAGGGTTTTTTACCAAAGGACGACCATTTCTTATTGGCATTGAGGATCCACAGGTTTTCTTTCAAGAACTGCCTTTTGCTTTTGTAAAGGAAAAAAATTCTTTTTGA 1140 0.4684 MEEQDQPPIPETFVYETLSPISLTSSAAGAADSPVSDHVEPYSVFRNEISLSTVQCASPESAAQDFFSLDVAGEDSSGRDPLPEPVTPAQPKMPALAPEPKLESGWFRGNCKFRSPMLQLHKEIVDFCEFLSPTLEEKAERNMAIESVSEVIKHIWPHCQVEVFGSFRTGLYLPTSDIDVVILKSGLPNPQIGLNAISRALSQKGMAKKIQVIGKARVPIIKFVEKRSGVAFDISFDIDNGPKAAEYIQEAVAKWPPLRPLCLILKVFLQQRELNEVYSGGIGSYALLAMLMAMLRNLRQSQASAEHNLGVLLVHFFDFYGRKLNTSDVGVSCNGAGTFFLKSSKGFFTKGRPFLIGIEDPQVFFQELPFAFVKEKNSF. 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06106 379 SUPERFAMILY PAP/OAS1 substrate-binding domain 256 363 - -
Seca4g06106 379 Gene3D Beta Polymerase, domain 2 133 241 IPR043519 -
Seca4g06106 379 PANTHER POLY(A) RNA POLYMERASE 100 362 IPR045862 GO:0043631|GO:1990817
Seca4g06106 379 MobiDBLite consensus disorder prediction 73 97 - -
Seca4g06106 379 Pfam Nucleotidyltransferase domain 147 247 IPR002934 GO:0016779
Seca4g06106 379 SUPERFAMILY Nucleotidyltransferase 115 268 IPR043519 -
Seca4g06106 379 CDD NT_PAP_TUTase 141 250 - -
Seca4g06106 379 Gene3D - 117 362 - -
Seca4g06106 379 FunFam non-canonical poly(A) RNA polymerase PAPD5 133 241 - -
Seca4g06106 379 Pfam Cid1 family poly A polymerase 308 362 IPR002058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06106 Seca-Chr4 119730890 119736947 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06106 K03514 - gmx:100811320 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g06106 4 119730890 119736947 Seca4g06106 4 119730890 119736947 ECH