Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0279 ATGCAAATCCAGATGGGGAGGTTCTTCTTCTTTCTATCTATTCTATGTCTTCTACCTCTGAAGCCTGTGGTGGCTCTGCCACTACACACCAATTCAAGGTGGATAGTAGACGAAGATGGCGCCCGGGTGAAGCTGGCATGCGTGAATTGGCTGTCGCATCAGGAAGCAGCGGTGGCGGAGGGCCTCAGCAACCACCCAGTTGACCTCATCTCCAAGAGGATTGCGTCCTTGGGGTTCAACTGTGTGAGGCTCACTTTGCCACTTTTCTTGGCCATCGACCAGTCACTGGCCTCCCTCACTGTTAGACAATCCTTTCAGAGGCTTGGCTTGCTTGAATCCCTTGCTGGTTTCCAGGCCAATAACCCTTCCATGCTTGATCTTCCTCTCACAAGCGCTTACCAGGCGGTGGTGTCTAACCTTGCGGACAACAATATGATGGTCATACTAGACAGTCACTTCAGCGAGCCCAGCTTCCATGGCAATGGCGTCTTTGGCGACCAGCACTTCAATCCAGACTTGTGGGTCAAGGGCCTCACCCGGATTGCCACCATGTTCAGCGGTGTCCCTAATGTGGTGGGCATGAGCTTGAGGAATGAGCTCCGATGCCCCAATCAGAATGTGAAGGACTGGTACAGGTACATGCAGAAAGGAGCTGAAGCAGTGCACTCAGCCAACCCAGATGTTCTGGTCATAATCTCTGGCTTGAGTGATGGTACAGACCTATCTTTCCTCCTCAATCAACAGCTGGAATTGACATTCACAGGGAAATTAGTGTTGGAGATGCATTGGCATGGATCGCGGGTTGGGAGGGCTGGGGAAACCAGCAACCCCAACAAGGTGTGCGGGAGAGTGGTGGACAGCATAATGAGGGGAGGAGGGGTTCTGCTACAGCAAGGGTGGCCATTAATGTTTGTGAGTGAGCTTGGGGTGGATGACAACAGGCACTTAAATTGCTTCTTTGGCCTGGCGGCTGAACTGGACTTCGATTGGGCATTGTGGACACTGGAAGAGACTAATGGGTTAATGAATTGGAACTCGAACTTCTTCCAGAGGATTTCAGCCCTCCAATCTCCTTTGCAAGGGCCAGATGTATCCCGAGTCAGACCACATAAAATAATCTTGCATCCTTCGACTGGTCTTTGCATTCTAAGGGAATCATTGTCTGAACCATTAAAGCTAGGTCCCTGCACCGAGTCAGAAGCTTGGGGCTACACCCCCCAAAAGATATTGATAGTGAAGGGAACATACTTCTGCCTTCAAGCAGTTGGGCTAGGGAAGCCTGCAAAACTCAGTATAATATGCACTCAACCTGGGTCAAATTGGGAGATCATTTCAGATTCAAAGATGTACCTGTCAACTAAGCTGGGGGATGGCACCACAGTTTGCTTGGATGTAGACTCCAGCAGCAACATTGTCACAGATGCTTGCAAGTGCTTGGGTAGAGATGATATGTGTGATCCTGGGAGCCAGTGGTTCAAGGTTGTTGACAGCACAAATATTACAAGAAGACCTATTCTTCAGATCGGCTAG 1530 0.5013 MQIQMGRFFFFLSILCLLPLKPVVALPLHTNSRWIVDEDGARVKLACVNWLSHQEAAVAEGLSNHPVDLISKRIASLGFNCVRLTLPLFLAIDQSLASLTVRQSFQRLGLLESLAGFQANNPSMLDLPLTSAYQAVVSNLADNNMMVILDSHFSEPSFHGNGVFGDQHFNPDLWVKGLTRIATMFSGVPNVVGMSLRNELRCPNQNVKDWYRYMQKGAEAVHSANPDVLVIISGLSDGTDLSFLLNQQLELTFTGKLVLEMHWHGSRVGRAGETSNPNKVCGRVVDSIMRGGGVLLQQGWPLMFVSELGVDDNRHLNCFFGLAAELDFDWALWTLEETNGLMNWNSNFFQRISALQSPLQGPDVSRVRPHKIILHPSTGLCILRESLSEPLKLGPCTESEAWGYTPQKILIVKGTYFCLQAVGLGKPAKLSIICTQPGSNWEIISDSKMYLSTKLGDGTTVCLDVDSSSNIVTDACKCLGRDDMCDPGSQWFKVVDSTNITRRPILQIG* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0279 509 Gene3D Glycosidases 26 358 - -
Vvi19g0279 509 SUPERFAMILY (Trans)glycosidases 27 342 IPR017853 -
Vvi19g0279 509 Pfam Cellulase (glycosyl hydrolase family 5) 70 345 IPR001547 GO:0004553|GO:0071704
Vvi19g0279 509 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 15 498 - -
Vvi19g0279 509 SUPERFAMILY Ricin B-like lectins 366 476 IPR035992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0279 Vvi-Chr19 2974921 2977185 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0279 22 505 Glycoside Hydrolase AT1G13130 50.867 3.10e-178 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0279 - - vvi:100258876 1030.39