Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2053 ATGGCAATTTGTTCCTCACCATCATCGTCATCGTCATCTTCTTCTTCTACGTCGTCGTTTGGTTCCTCGAACACCGCGAAGGCGTGGATAATCCATGGCATTGTGGCCGGAGTGGCGATTGCTGCGGCGGTGGGCGCACGCGCTTACATGACCCGATTCAGCAAGTTTCGGAGCCGGGTCGTGGGCATCATACCCGCCCGATTCGCTTCCTCGCGCTTTGAGGGAAAGCCTCTCGTTCAAATCCTGGGCAAGCCCATGATCCAGAGAACATGGGAAAGGGCAAAGCTGGCAGCTACATTAGATCATGTTGTTGTGGCAACTGATGATGAAAAGATTGCTGACTGCTGTAGACAATTTGGAGCTGATGTTATAATGACCTCAGAATCTTGCAGAAATGGTACGGAGCGCTGCAATGAAGCCCTACAGAAACTTGGGAAAAAATATGATATTGTTGTCAACATTCAGGGTGATGAGCCACTTATTGAACCTGAGATAATCGATGGTGTTGTGAAAGCTTTGCAGGCAGCTCCAGATGCAGTGTTCAGCACAGCAGTCACATCTTTGAAGCCTGAAGATGCCCATGATCCAAATAGAGTGAAATGTGTGGTAGATAACCGTGGCTATGCCATTTACTTTTCACGAGGATTAATCCCATTCAACAAGTCAGGGAAGGTCAATCAACTGTTCCCGTATTTGCTTCATCTTGGGATTCAGAGCTATGATGCAAAGTTTTTGAATATATACCCTAATCTTCGACCTACTCCTTTGCAACTTGAGGAGGATTTGGAGCAGCTTAAAGTCCTTGAGAATGGCTACAAGATGAAGGTGATAAAAGTTCATCATGAGGCTCATGGTGTTGACACTCCTGAAGATGTTGGAAAGATAGAATCTCTAATGCGTGAGAGGAACTTATCTTGA 918 0.463 MAICSSPSSSSSSSSSTSSFGSSNTAKAWIIHGIVAGVAIAAAVGARAYMTRFSKFRSRVVGIIPARFASSRFEGKPLVQILGKPMIQRTWERAKLAATLDHVVVATDDEKIADCCRQFGADVIMTSESCRNGTERCNEALQKLGKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAHDPNRVKCVVDNRGYAIYFSRGLIPFNKSGKVNQLFPYLLHLGIQSYDAKFLNIYPNLRPTPLQLEEDLEQLKVLENGYKMKVIKVHHEAHGVDTPEDVGKIESLMRERNLS* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2053 305 CDD CMP-KDO-Synthetase 59 298 IPR004528 GO:0008690
Gso6g2053 305 PANTHER BNAA05G35640D PROTEIN 21 305 - -
Gso6g2053 305 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 50 300 IPR029044 -
Gso6g2053 305 PANTHER 3-DEOXY-MANNO-OCTULOSONATE CYTIDYLYLTRANSFERASE 21 305 - -
Gso6g2053 305 SUPERFAMILY Nucleotide-diphospho-sugar transferases 60 302 IPR029044 -
Gso6g2053 305 TIGRFAM kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 62 292 IPR004528 GO:0008690
Gso6g2053 305 Hamap 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 58 300 IPR004528 GO:0008690
Gso6g2053 305 Pfam Cytidylyltransferase 62 272 IPR003329 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2053 Gso-Chr6 37926606 37930800 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2053 K00979 - gmx:100800647 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2053 6 37926606 37930800 Gso6g2053 6 37926606 37930800 ECH
Gso12g1253 12 22933375 22938123 Gso6g2053 6 37926606 37930800 GST