Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi16g0619 . . . . . . . . . Aev05g0899 . Ahy15g0967 . Aip05g00997 . . . . . . Arst10g03564 . . . . . . Bva07g00830 . . . . . . . Dod02g1003 . . . . . . . . . . . . . Lal2g0806 . . . . . . . . . . . . . . . . . . . . . . . Lja2g0077 . Mal6g1609 . . . . . . . Mtr5g0390 . . Phco5g01208 . . . . . Pste9g00805 . . . . . . . Pvu4g0826 . . . . . Spst4g03515 . . . . . . Tpr2g3794 . . . Tsu05g00357 . . . . . . . . . . . .
Vvi16g0620 . . . . . . Aed5g0045 . Aev04g3743 . Ahy13g1259 . Aip03g01378 . . . . . Apr5g0668 . . . . . . . . Bva07g00829 . . Cca04g00052 . . . Dod03g2496 . . . . . Gma09g02129 . . . Gso9g1906 . . . Lal1g0017 . . . . . Lan13g0024 . . . . . . . . . . . . . . . . . Lja3g0046 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu3g3302 . Sto7g2438 . . . . . . . . . . . . . . . . . Vra2g0051 .
Vvi16g0621 . . . . Adu03g01030 . Aed5g0044 . Aev04g3744 . Ahy13g1260 . Aip03g01379 . . . Amo13g1627 . Apr5g0669 . Arst3g01324 . Bach9g01491 . . . . Bva07g00827 . Car06g03122 Cca04g00051 . . . Dod03g2495 . . . . . Gma09g02130 . . . Gso9g1907 . . . Lal1g0016 . . . . . Lan13g0023 . . . . . Lapu11g01117 . . . . . . . . . . . Lja3g0045 . Mal7g1149 . . . . . . . Mtr4g1042 . . . Phco9g00086 . . . . . Pste1g00254 . Pte1g00869 . . . Pumo11g02281 . Pvu11g0049 . Rops3g00068 . Seca6g00102 . . . Ssu3g3303 . Sto7g2439 . Tpr4g1173 . . . Tsu06g00913 . Vian5g01861 . . . Vimu5g02833 . Viun11g03010 . . . Vra2g0050 .
Vvi16g0622 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g0623 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g0624 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal6g3209 . . . . . . . Mtr6g1748 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr2g5027 . . . Tsu06g03398 . . . . . . . . . . . .
Vvi16g0625 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g0626 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g0627 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g0628 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 2272 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Arst Arst10g03564 Chr10 103523609 103526173 -
Vvi Vvi16g0619 Chr16 12517794 12518390 -
Aev Aev05g0899 Chr05 6355463 6356047 -
Ahy Ahy15g0967 Chr15 14641117 14642093 +
Aip Aip05g00997 Chr05 14152466 14153547 +
Arst Arst10g03564 Chr10 103523609 103526173 -
Bva Bva07g00830 Chr07 10322278 10323054 +
Dod Dod02g1003 Chr02 12706906 12707499 -
Lal Lal2g0806 Chr2 5210805 5212492 -
Lja Lja2g0077 Chr2 584587 585405 +
Mal Mal6g1609 Chr6 29931930 29932520 -
Mtr Mtr5g0390 Chr5 3561495 3562442 +
Phco Phco5g01208 Chr5 45783631 45788686 -
Pste Pste9g00805 Chr9 4177577 4183790 -
Pvu Pvu4g0826 Chr4 13021114 13026503 +
Spst Spst4g03515 Chr4 76103796 76112886 -
Tpr Tpr2g3794 Chr2 40854247 40854990 -
Tsu Tsu05g00357 Chr05 2664886 2665473 +
Vvi Vvi16g0620 Chr16 12533320 12534870 -
Aed Aed5g0045 Chr5 365976 367562 +
Aev Aev04g3743 Chr04 34731236 34732810 -
Ahy Ahy13g1259 Chr13 14718082 14720175 -
Aip Aip03g01378 Chr03 14206229 14208077 -
Apr Apr5g0668 Chr5 9187330 9189260 -
Bva Bva07g00829 Chr07 10312240 10314479 +
Cca Cca04g00052 Chr04 483882 485663 +
Dod Dod03g2496 Chr03 56490203 56492227 +
Gma Gma09g02129 Chr09 46828255 46829835 -
Gso Gso9g1906 Chr9 43446345 43448242 -
Lal Lal1g0017 Chr1 185599 187167 +
Lan Lan13g0024 Chr13 125062 126840 +
Lja Lja3g0046 Chr3 527856 530035 +
Ssu Ssu3g3302 Chr3 89660078 89661208 -
Sto Sto7g2438 Chr7 29900160 29901731 -
Vra Vra2g0051 Chr2 453297 455786 +
Vvi Vvi16g0621 Chr16 12537235 12548201 -
Adu Adu03g01030 Chr03 10719267 10722546 -
Aed Aed5g0044 Chr5 353043 364824 +
Aev Aev04g3744 Chr04 34733127 34736911 -
Ahy Ahy13g1260 Chr13 14720568 14723920 -
Aip Aip03g01379 Chr03 14208737 14212031 -
Amo Amo13g1627 Chr13 22164510 22167983 -
Apr Apr5g0669 Chr5 9189772 9194456 -
Arst Arst3g01324 Chr3 11149524 11152857 -
Bach Bach9g01491 Chr9 13665379 13669493 -
Bva Bva07g00827 Chr07 10307293 10311707 +
Car Car06g03122 Chr06 56626640 56632599 -
Cca Cca04g00051 Chr04 476141 480874 +
Dod Dod03g2495 Chr03 56484869 56489604 +
Gma Gma09g02130 Chr09 46831324 46834007 -
Gso Gso9g1907 Chr9 43449210 43452526 -
Lal Lal1g0016 Chr1 181616 185042 +
Lan Lan13g0023 Chr13 121287 124255 +
Lapu Lapu11g01117 Chr11 13249148 13253463 -
Lja Lja3g0045 Chr3 518570 526806 +
Mal Mal7g1149 Chr7 36244234 36250883 +
Mtr Mtr4g1042 Chr4 13443104 13448552 +
Phco Phco9g00086 Chr9 583041 586298 +
Pste Pste1g00254 Chr1 896900 899698 +
Pte Pte1g00869 Chr1 16927726 16931933 +
Pumo Pumo11g02281 Chr11 55395054 55399198 -
Pvu Pvu11g0049 Chr11 365591 369461 +
Rops Rops3g00068 Chr3 885645 890258 +
Seca Seca6g00102 Chr6 2718109 2722959 +
Ssu Ssu3g3303 Chr3 89663503 89666926 -
Sto Sto7g2439 Chr7 29903102 29906729 -
Tpr Tpr4g1173 Chr4 11222373 11227005 +
Tsu Tsu06g00913 Chr06 8199340 8204397 +
Vian Vian5g01861 Chr5 40699898 40703001 -
Vimu Vimu5g02833 Chr5 37610276 37611410 -
Viun Viun11g03010 Chr11 41345719 41349405 -
Vra Vra2g0050 Chr2 449031 452969 +
Vvi Vvi16g0622 Chr16 12555959 12555991 +
Vvi Vvi16g0623 Chr16 12591958 12592329 +
Vvi Vvi16g0624 Chr16 12604162 12605598 +
Mal Mal6g3209 Chr6 94170132 94179223 -
Mtr Mtr6g1748 Chr6 32117729 32127053 -
Tpr Tpr2g5027 Chr2 56093921 56103271 -
Tsu Tsu06g03398 Chr06 44912733 44945969 -
Vvi Vvi16g0625 Chr16 12637602 12638528 +
Vvi Vvi16g0626 Chr16 12647649 12649619 +
Vvi Vvi16g0627 Chr16 12718497 12718865 +
Vvi Vvi16g0628 Chr16 12719058 12720230 +