Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0628 ATGAACTGCAGTGAAGAGTTAAAGCGGTTTGTGGGGCTCACGGGTATACCTGTGGCAAGTACTTTAATGGGTCTAGGGATTTTCCCATGCACGGATGACCTATCTCTTCACATGCTCGGAATGCATGGGACTATACAAGCAAACTACGCTGTGGACAGGTCTGATTTGTTGCTAGCATTTGGTGTCCGATTTGACGATCAGGTAACAGGTAAAGTTGAAGCTTTCGCTAGAAATGCTACAATTGTTCATATTGATATTGATCCCGCAGAAATCGGAAAGAACAAAAAACCCCATCTTTCAATTTGCACTGATGTAAAGCTGGCATTGGAAGGCATCAACACGATCTTGGAGAAGAATGCAGCAAAGCAACCCACTGCAGAAAACAAAAGAGGAAAAGGGACAAAGTTTAATGACAATGTATCGGCTTGGATAGAGGAAATTGATGAGCAGAAAGAGAAATACCCACCAAGTTATAGAACATTTGGAGAGGCAATTCCTCCACAGTATGCTATTCAACTTTTGGATGAATTAACTAATGGAAATGCTATTGTTTGTACCGGAGTTGGGCAGCATCAGATGTGGGCTGCCCAGTATTACAAGCATAAGAATCCCCGCCACTGGCTCTCTTCAAGTGGATTAGGAGCAATGAGGTTCGGATTGCCTGCTGCTATGGGTGCTGCACTTGCTAAACCTGACGCAATTGTTGTCGACATTGATGGTGACGGAAGCTTTATGATGAATATCCAGGAATTGGCTACAATACGAGTGGAAAATCTGCCAGTGAAGATTATGCTATTGAATAACCAGCACCTTGGCATGGTTTATCAATTTGAGTATGAATATGGGGACGGTGATTCGTTGCACTCATACATGGGGAATCCATCGAACCAGGCCCAAGTATTTCCTGACATGTTGATGTTTGCGGAAGCTTGCAACATAACTGCAGCCCGTGTGACAAAGAAAAGCAGAGCTGAGAGAGGCAATAGAGAAGATGTTGAAGACTCCTGGTCCATATATGCTAGATGTGATGATACCCCATCAAGCACAAGTGCTGCAGTTGATTCCCGATGGTGGCACTTTCAAAGATGCTATCAAAGGTGCTCAGTAAATGTACAACAAATGCAATTTTATTGTGAACTGTCAAGTACTAATACAATGGAAAATAAAAAATAA 1173 0.4271 MNCSEELKRFVGLTGIPVASTLMGLGIFPCTDDLSLHMLGMHGTIQANYAVDRSDLLLAFGVRFDDQVTGKVEAFARNATIVHIDIDPAEIGKNKKPHLSICTDVKLALEGINTILEKNAAKQPTAENKRGKGTKFNDNVSAWIEEIDEQKEKYPPSYRTFGEAIPPQYAIQLLDELTNGNAIVCTGVGQHQMWAAQYYKHKNPRHWLSSSGLGAMRFGLPAAMGAALAKPDAIVVDIDGDGSFMMNIQELATIRVENLPVKIMLLNNQHLGMVYQFEYEYGDGDSLHSYMGNPSNQAQVFPDMLMFAEACNITAARVTKKSRAERGNREDVEDSWSIYARCDDTPSSTSAAVDSRWWHFQRCYQRCSVNVQQMQFYCELSSTNTMENKK* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0628 390 ProSitePatterns Thiamine pyrophosphate enzymes signature. 224 243 IPR000399 GO:0000287|GO:0030976
Vvi16g0628 390 Gene3D - 2 156 - -
Vvi16g0628 390 Gene3D - 157 325 - -
Vvi16g0628 390 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 187 323 IPR011766 GO:0003824|GO:0030976
Vvi16g0628 390 PANTHER THIAMINE PYROPHOSPHATE ENZYMES 2 333 IPR045229 -
Vvi16g0628 390 Pfam Thiamine pyrophosphate enzyme, central domain 2 110 IPR012000 GO:0000287|GO:0030976
Vvi16g0628 390 SUPERFAMILY DHS-like NAD/FAD-binding domain 2 155 IPR029035 -
Vvi16g0628 390 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 165 323 IPR029061 -
Vvi16g0628 390 FunFam Acetolactate synthase 1 156 - -
Vvi16g0628 390 CDD TPP_AHAS 165 326 IPR039368 GO:0030976
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0628 Vvi-Chr16 12719058 12720230 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0628 K01652 - vvi:100246801 639.032