Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0620 ATGCTGACTGCAACACAGCCTCTGTGTCTCCACAAATCTCTGAAAATAAACAAGACCCAATTGCAAAAGCAAAAACAATTTCATCGAGACACAAAACCCAACCTCGTTTTCCCGAAATCATCCCCAACGCCACTCTTAATCAATCACAAACCCCGCAATCACACCAAACTTCAAGCCCTTGAAGCCCTTCTCCGCGACCTCCAGGCCTCTATACAAGACGGCATTACAGTCGATGCCCAGATCTTTTCTTCGCTTCTTGAGACTTGTTTCCAATTACAGGCCTTTGATCATGGTATCCGAATTCACCGCCTTATACCCACCAGCCTCTTACGTAAAAGTGTTGCTCTTTCATCCAAGTTGCTTAGGTTGTATGCGTCAATTGGGCGGATCGAGGAAGCCCATCGACTGTTCGATCAAATGTCTAGGCGAAATCGCTCGGCGTTTGCTTGGAATTCGTTGATATCTGGGTACGCTGAACTGGGTCTGTATGAAGATGCCATGGCACTTTACTTTCAGATGGAGGAAGAGGGTGTTGTGCCGGACCGGTTCACGTTTCCACGAGTGTTGAAAGCTTGTGGAGGAATTGGCTCGATTTCGGTAGGGGAAGAGGTGCACCGGCATGTTGTTCGTTGTGGCTTTGCGGATGATGGGTTTGTGCTCAATGCGCTTGTTGACATGTATGCCAAGTGTGGTGACATTGTGAAGGCTCGTAAGGTGTTTGATAAGATTGTGTGCAGGGACTCGGTTTCGTGGAATTCGATGTTAACAGGCTACATTCGTCATGGGCTTCCTTTGCAGGCATTGAGCATCTTCCGCCGGATGCTTCAATATGGATTTGAGCCGGATGCTGTTGCTATATCTACTGTTGTCACTGGCGTGCCATCACTAAAACTGGCAGGGCAAATTCATGGATGGGTTCTTCGGCGTGGAGTTCAGTGGAATTTATCTATTGCTAATTCTTTGATTGTTCTGTACTCAAATCACGGGAAATTAGATCAAGCTTGTTGGTTGTTTGATCACATGCCGGAAAGGGATGTTGTGTCATGGAATTCTATAATATCTGCTCACCGGAAAGACCTGAAAGCTATAACATATTTTTCACGGATGCAGAAGGCTGATGTGCTGCCAGATGTGGTTACATTTGTGTCATTACTATCTGCTTGTGCCCATTTAGGTTTGGTTAAGGATGGGGAAGGGTTATTTTCAATGATGAGAGAGGACTATGGAATGATTCCAAGCATGGAGCACTATGCATGTATGGTGAATCTATATGGAAGAGCAGGATTGATTGAGGAAGCCTATGAAATCATTGAGAAGAGAATGGAGTTTGAGGCCGGTCCGACTGTGTGGGGAGCCTTGTTGTATGCTTGTTACTTTCATCACAATGTAGATATTGGAAAGATAGCTGCAGAGTGTCTTTTTGAGCTGGAGCCGGATAATGAACATAATTTTGAGCTTTTGATGAATATTTACCGCAATGTGGGTAGATTGGAGGATGTAGAGAAAGTGAGAAAAATGATGGCAGATAGAGGATTTGATTCATTATACTAA 1551 0.4481 MLTATQPLCLHKSLKINKTQLQKQKQFHRDTKPNLVFPKSSPTPLLINHKPRNHTKLQALEALLRDLQASIQDGITVDAQIFSSLLETCFQLQAFDHGIRIHRLIPTSLLRKSVALSSKLLRLYASIGRIEEAHRLFDQMSRRNRSAFAWNSLISGYAELGLYEDAMALYFQMEEEGVVPDRFTFPRVLKACGGIGSISVGEEVHRHVVRCGFADDGFVLNALVDMYAKCGDIVKARKVFDKIVCRDSVSWNSMLTGYIRHGLPLQALSIFRRMLQYGFEPDAVAISTVVTGVPSLKLAGQIHGWVLRRGVQWNLSIANSLIVLYSNHGKLDQACWLFDHMPERDVVSWNSIISAHRKDLKAITYFSRMQKADVLPDVVTFVSLLSACAHLGLVKDGEGLFSMMREDYGMIPSMEHYACMVNLYGRAGLIEEAYEIIEKRMEFEAGPTVWGALLYACYFHHNVDIGKIAAECLFELEPDNEHNFELLMNIYRNVGRLEDVEKVRKMMADRGFDSLY* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0620 516 Pfam PPR repeat family 247 292 IPR002885 -
Vvi16g0620 516 Pfam PPR repeat family 147 192 IPR002885 -
Vvi16g0620 516 Pfam PPR repeat 220 246 IPR002885 -
Vvi16g0620 516 Pfam PPR repeat 417 438 IPR002885 -
Vvi16g0620 516 Pfam PPR repeat 379 407 IPR002885 -
Vvi16g0620 516 Pfam PPR repeat 319 345 IPR002885 -
Vvi16g0620 516 Pfam PPR repeat 120 144 IPR002885 -
Vvi16g0620 516 FunFam Pentatricopeptide repeat-containing protein chloroplastic 199 298 - -
Vvi16g0620 516 Gene3D Tetratricopeptide repeat domain 295 358 IPR011990 GO:0005515
Vvi16g0620 516 Gene3D Tetratricopeptide repeat domain 359 514 IPR011990 GO:0005515
Vvi16g0620 516 Gene3D Tetratricopeptide repeat domain 52 199 IPR011990 GO:0005515
Vvi16g0620 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Vvi16g0620 516 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 246 512 IPR046960 GO:0003723|GO:0009451
Vvi16g0620 516 FunFam Pentatricopeptide repeat-containing protein At4g25270, chloroplastic 55 198 - -
Vvi16g0620 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
Vvi16g0620 516 NCBIfam pentatricopeptide repeat 149 181 IPR002885 -
Vvi16g0620 516 NCBIfam pentatricopeptide repeat 120 144 IPR002885 -
Vvi16g0620 516 NCBIfam pentatricopeptide repeat 249 283 IPR002885 -
Vvi16g0620 516 NCBIfam pentatricopeptide repeat 219 247 IPR002885 -
Vvi16g0620 516 NCBIfam pentatricopeptide repeat 379 413 IPR002885 -
Vvi16g0620 516 SUPERFAMILY TPR-like 105 277 IPR011990 GO:0005515
Vvi16g0620 516 FunFam Pentatricopeptide repeat-containing protein At4g25270, chloroplastic 319 489 - -
Vvi16g0620 516 Pfam E motif 460 511 IPR046848 -
Vvi16g0620 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 377 407 IPR002885 -
Vvi16g0620 516 Gene3D Tetratricopeptide repeat domain 200 294 IPR011990 GO:0005515
Vvi16g0620 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0620 Vvi-Chr16 12533320 12534870 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0620 71 512 Glycoside Hydrolase AT3G49170 32.671 1.30e-75 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0620 - - vvi:100241682 1041.18