Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0625 ATGATTAAAGAGAATCCAAACATAGGCGCCTCCTTGGATGCTCGTCAAGATATTGCCAACGTTGAGGTACCAAAACTGGGTAAAATTGCAGCAGTAAACGCCATCGGAGAGTGGGGACAGCCCAAATCTAGGATCACGCATCTTGTATTCTGTACAACCACGAGCTTACACATGCCTGGTGCCGACTATCAACTTGCTAAGATCCTAGGTCTTGAACCAAAGGTTAAACGGGTGATGTTGTACCTTCAAGGTTGCTTTGGTGGTGGGACTGCCCTCAGAATGGCTAAAGATCTAGCAGAGAACAACGTAGGTGCTCGTGTTCTTGTAGTATGTTCTGAAATCATAACATCGACTTTCCGTAAGCCTTCTGAGATCGAAGTAGAAAATTTAGTAGGCCAAGCTCTTTTTGGGGATGGAGCCGCAGCTCTAATTGTGGGATCAGATCCAGATACCTTAATTGAACGACCATTATTCCAGCTCATCTCCGCAGATCAAATGTTCATCCCTGATTCAGAGAATGCAATTGAAGGGCATGTTTGTGAAATGGGCCTTGTTGTTAATTTGGCAAAAAATGTGCCAAACCTAATTTTTGAGTGCATAGACAAATGCATGGTTGAAGCTTTCGGTCCCCTTGGTATTAATGATTGGAACTCATTATTTTTTATCATTCACCCAGGTGGTCGGGCAATTCTTGATCAAATCGAAGCAAAACTCAGCTTAGAAAAGGAAAAACTCGAAGTTAGTAGGCATGTGCTAAGGGAGTATGGAAATATTGTGAGTTCATGCGTGTTCTTTGTCATGGATGAGATGAGAAAAAAGTCTTTCAAAGAAGAAAAGGCCACTACAGGGGAGGGATTGGAGTGGGGTGTTTTGTTGGGGTTTGGACCAGGCTTGACAGTGGAGACGGTTGTGCTACGCAGTCAGTGA 927 0.438 MIKENPNIGASLDARQDIANVEVPKLGKIAAVNAIGEWGQPKSRITHLVFCTTTSLHMPGADYQLAKILGLEPKVKRVMLYLQGCFGGGTALRMAKDLAENNVGARVLVVCSEIITSTFRKPSEIEVENLVGQALFGDGAAALIVGSDPDTLIERPLFQLISADQMFIPDSENAIEGHVCEMGLVVNLAKNVPNLIFECIDKCMVEAFGPLGINDWNSLFFIIHPGGRAILDQIEAKLSLEKEKLEVSRHVLREYGNIVSSCVFFVMDEMRKKSFKEEKATTGEGLEWGVLLGFGPGLTVETVVLRSQ* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0625 308 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 2 307 IPR011141 GO:0009058|GO:0016747
Vvi16g0625 308 SUPERFAMILY Thiolase-like 156 307 IPR016039 GO:0016746
Vvi16g0625 308 Gene3D - 157 308 IPR016039 GO:0016746
Vvi16g0625 308 Pfam Chalcone and stilbene synthases, C-terminal domain 159 307 IPR012328 -
Vvi16g0625 308 FunFam Chalcone synthase 1 157 308 - -
Vvi16g0625 308 SUPERFAMILY Thiolase-like 10 152 IPR016039 GO:0016746
Vvi16g0625 308 CDD CHS_like 3 305 - -
Vvi16g0625 308 Pfam Chalcone and stilbene synthases, N-terminal domain 2 149 IPR001099 -
Vvi16g0625 308 FunFam Chalcone synthase 2 1 156 - -
Vvi16g0625 308 Gene3D - 1 156 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0625 Vvi-Chr16 12637602 12638528 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0625 30 295 Miscellaneous Gene Families AT4G34250 26.174 1.64e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0625 K00660 - vvi:100854415 603.208