Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0624 ATGGGAACCGATGCCTTCCAAGAAGTCCCACTTATTGATATAACTCGACCGATCACAAAGTTCAATTATTTAGTTCTTGATGTTGAAGACATTCCTCGCACAGTTAAAGAAGCCTTTCTCCTTGCAACTTCAGGCCGACCTGGTCCTGTATTGATCGATATACCAAGAGATATACAGAAAGAGCTCGTGGTTCCGAATTGGAATAAGCCAATTATGCTGCCTGGGAATGCATCCAGATTGCCTAAATTGCCGGAAAAGGCCCACCTGGAAGAAATTGTTCGATTAATTTCAGTGTCAAAGAGGCCAGTTGTGTATGCTGGTGGAGGGTGTATGAACTGCAGTGAAGAGTTAAGGCGGTTTGTGGGGCTCACTGGTATACCTGTGGCAAGTACTTTAATGGGTCTAGGGATTTTCGCATGCACGGATGACCTATCTCTTCACATGCTCGGAATGCATGGGACTATACAAGCAAACTACGCTGTGGACAGGTCTGATTTGTTGCTAGCATTTGGTGTCCGATTTGACGATCGGGTAACAGGTAAAGTTGAAGCTTTCGCTAGAAATGCTACAATTGTTCATATTGATATTGATCCAGCAGAAATCGGAAAGAACAAAAAACCCCATCTTTCAATTTGCACTGATGTAAAGCTGGCATTGGAAGGCATCAACACGATCTTGGAGAAGAATGCAGCAAAGCAACCCACTGCAGAAAACAAAAGAGGAAAAGGGACAAAGTTTAATGACAATGTATCGGCTTGGATAGAGGAAATTGATGAGCAGAAAGAGAAATACCCAGCAAGTTATAAAACATTTGGAGAGGCTATTCCTCCACAGTATGCTATTCAACTTTTGGATGAATTAACTAATGGAAATGCTATTATTTGTACCGGAGTCGGGCAGCATCAGATGTGGGCTGCCCAGTATTACAAGCATAAGAATCCCCGCCACTGGCTCTCTTCAAGTGGATTAGGAGCAATGGGGTTCGGATTGCCTGCTGCTATGGGTGCTGCACTTGCTAAACCCGACGCAATTGTTGTCGACATTGATGGTGACGGAAGCTTTATGATGAATATCCAGGAATTGGCTACAATACGAGTGGAAAATCTGCCAGTGAAGATTATGCTATTGAATAATCAGCACCTTGGCATGGTTTATCAATATGAGTATGAATATGGGGACGGTGATTCGTTGCACTCATACATGGGGAATCCATCGAACCAGGCCCAAGTATTTCCTGACATGTTGATGTTTGCGGAAGCTTGCAACATAACTGCAGCCCGTGTGACAAAGAAAGCAGAGCTGAGAGAGGCAATAGAGAAGATGTTGAAGACTCCTGGTCCATATCTGCTAGATGTGATGGTACCCCATCAAGCACAAGTGCTGCAGTTGATTCCCGATGGTGGCACTTTCAAAGATGCTATCAAAGGTGCTCAGTAA 1437 0.4405 MGTDAFQEVPLIDITRPITKFNYLVLDVEDIPRTVKEAFLLATSGRPGPVLIDIPRDIQKELVVPNWNKPIMLPGNASRLPKLPEKAHLEEIVRLISVSKRPVVYAGGGCMNCSEELRRFVGLTGIPVASTLMGLGIFACTDDLSLHMLGMHGTIQANYAVDRSDLLLAFGVRFDDRVTGKVEAFARNATIVHIDIDPAEIGKNKKPHLSICTDVKLALEGINTILEKNAAKQPTAENKRGKGTKFNDNVSAWIEEIDEQKEKYPASYKTFGEAIPPQYAIQLLDELTNGNAIICTGVGQHQMWAAQYYKHKNPRHWLSSSGLGAMGFGLPAAMGAALAKPDAIVVDIDGDGSFMMNIQELATIRVENLPVKIMLLNNQHLGMVYQYEYEYGDGDSLHSYMGNPSNQAQVFPDMLMFAEACNITAARVTKKAELREAIEKMLKTPGPYLLDVMVPHQAQVLQLIPDGGTFKDAIKGAQ* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0624 478 Gene3D - 1 80 - -
Vvi16g0624 478 PANTHER THIAMINE PYROPHOSPHATE ENZYMES 2 470 IPR045229 -
Vvi16g0624 478 CDD TPP_AHAS 275 467 IPR039368 GO:0030976
Vvi16g0624 478 CDD TPP_PYR_POX_like 1 56 - -
Vvi16g0624 478 Gene3D - 267 453 - -
Vvi16g0624 478 Gene3D - 89 266 - -
Vvi16g0624 478 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 2 69 IPR029061 -
Vvi16g0624 478 FunFam Acetolactate synthase 82 266 - -
Vvi16g0624 478 Pfam Thiamine pyrophosphate enzyme, central domain 90 220 IPR012000 GO:0000287|GO:0030976
Vvi16g0624 478 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 275 472 IPR029061 -
Vvi16g0624 478 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 62 IPR012001 GO:0030976
Vvi16g0624 478 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 297 452 IPR011766 GO:0003824|GO:0030976
Vvi16g0624 478 ProSitePatterns Thiamine pyrophosphate enzymes signature. 334 353 IPR000399 GO:0000287|GO:0030976
Vvi16g0624 478 SUPERFAMILY DHS-like NAD/FAD-binding domain 87 265 IPR029035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0624 Vvi-Chr16 12604162 12605598 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0624 K01652 - vvi:100246801 954.896