Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0668 ATGTATATATATCCAAATGCCTCAGTTCCTGTCCAAGAAATTAGAATGATAGCCACGCTAAACTTCCCTCCAAATCGTATGAGTTTGTGCTCCGGAAAGAAGAGCACCAACAAAAACAAAAGTAGGAAACATAGTCGGTGGGGAACCAAAGAAAGAAGAAACGCTCTTTCTTTCCCAAAACCCAAATCAACCCCACTCCTCATCCGTCACCGACCTCGTACTCAAACAAAATTCGAAGCACTCGAACAAGTGGTCAAAGATCTTGAAGCCTCTGTCGAGAAGGGCATCAGAATTGACCCTGAAATCTATGCTTCTTTGTTGGAAACATGCTACCACTTGGAAGCCATTCATCACGGTATCCGAGTCCACCGCCTTATCCCATCATCGCTCTTGCATAGAAATGTCGGCATCTCCTCGAAGCTTCTGAGGTTGTATGCCTCGTGTGGGTATATGGACGAGGCCCACGACCTGTTTGATCAAATGGCTAAGAGGGACACATCTGCTTTTCCCTGGAATTCACTTATCTCAGGATATGCCCAAGTGGGCTTCTATGATGATGCCATTGCTCTCTACTTCCAGATGGTGGAAGAGGGTGTTGAACCTGACCTGTTCACCTTTCCCCGTGTTCTCAAAGCTTGTGCGGGAATTGGGTCTGTTCAAGTGGGGGAAGAGGTGCATCGCCATGTGGTTCGTTCTGGCTTTGCCAATGATGGGTTTGTTCTCAATGCTCTTGTTGACATGTATTCTAAGTGTGGTGACATTGTAAAGGCTCGAAAGATCTTCAACAAGATGCCTCATAGAGACTCCGTTTCATGGAATTCAATGCTTGTAGCTTATGTTCATCACGGCCTAGAGGTCGAGACAATGAACATTTTCCGCTTCATGCATTTGGCCGGGTATAAACCTGACTCTATTACCATATCCACCATTCTTACAGGTGTGTCATCACTGTATCTTGGGGTTCAAATTCATGGATGGGTAATCCGGCAGGGACTTGAATGGAACTTGTCCATTGCTAATTCCTTAATCATGATGTACTCCAATCATGGCAGGTTGGATAAGGCATGTTGGATATTCAATCTAATGCCAGAGAGGGATGTTGTTTCGTGGAATTCGATAATATCTGCTTATTGCAAACACCGGGAAGCCCTTGCTTATTTTGAGCGAATGAAGGAAGCTGGTGTGGAGCCTGATAAAATAACATTTGTTTCATTGTTGTCAGCTTGTGCCTATTCAGGTTTGGTGAAGGATGGAGAGAGATTGTTTGCTTTGATGTGTGAAAAATATGAAATAAAACCAATTATGGAACATTATGGTTGTATGGTTAACCTTTATGGAAGAGCTGGACTGATTAAAAAGGCTTATAGCATCATAGTCGAGGGAATGGATTCTGAGGTTGCTGGTCCAACTCTGTGGGGTGCCTTGTTGTATGCATGCTCTTTGCATGGAGATGTAGCTATAGGGGAGATTGCTGCAAGCAAGCTTTTTGATTTAGAGCCTGACAATGAACAAAATTTTGTACTTCTTATGAGGATCTATGAAAATGCAGGCAGATTGGATGACATGGAGAGAGTTAGAATGATGCTGGTTGACAGAGGATTGGATTATTAG 1611 0.4364 MYIYPNASVPVQEIRMIATLNFPPNRMSLCSGKKSTNKNKSRKHSRWGTKERRNALSFPKPKSTPLLIRHRPRTQTKFEALEQVVKDLEASVEKGIRIDPEIYASLLETCYHLEAIHHGIRVHRLIPSSLLHRNVGISSKLLRLYASCGYMDEAHDLFDQMAKRDTSAFPWNSLISGYAQVGFYDDAIALYFQMVEEGVEPDLFTFPRVLKACAGIGSVQVGEEVHRHVVRSGFANDGFVLNALVDMYSKCGDIVKARKIFNKMPHRDSVSWNSMLVAYVHHGLEVETMNIFRFMHLAGYKPDSITISTILTGVSSLYLGVQIHGWVIRQGLEWNLSIANSLIMMYSNHGRLDKACWIFNLMPERDVVSWNSIISAYCKHREALAYFERMKEAGVEPDKITFVSLLSACAYSGLVKDGERLFALMCEKYEIKPIMEHYGCMVNLYGRAGLIKKAYSIIVEGMDSEVAGPTLWGALLYACSLHGDVAIGEIAASKLFDLEPDNEQNFVLLMRIYENAGRLDDMERVRMMLVDRGLDY* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0668 536 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Apr5g0668 536 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 267 IPR002885 -
Apr5g0668 536 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Apr5g0668 536 Gene3D Tetratricopeptide repeat domain 76 220 IPR011990 GO:0005515
Apr5g0668 536 PANTHER OS01G0913400 PROTEIN-RELATED 40 535 - -
Apr5g0668 536 PANTHER - 40 535 - -
Apr5g0668 536 SUPERFAMILY TPR-like 117 271 IPR011990 GO:0005515
Apr5g0668 536 Gene3D Tetratricopeptide repeat domain 221 316 IPR011990 GO:0005515
Apr5g0668 536 Gene3D Tetratricopeptide repeat domain 317 413 IPR011990 GO:0005515
Apr5g0668 536 Gene3D Tetratricopeptide repeat domain 414 535 IPR011990 GO:0005515
Apr5g0668 536 Pfam PPR repeat 241 266 IPR002885 -
Apr5g0668 536 Pfam PPR repeat 141 164 IPR002885 -
Apr5g0668 536 Pfam PPR repeat 270 299 IPR002885 -
Apr5g0668 536 Pfam PPR repeat 437 458 IPR002885 -
Apr5g0668 536 MobiDBLite consensus disorder prediction 28 55 - -
Apr5g0668 536 Pfam PPR repeat family 365 410 IPR002885 -
Apr5g0668 536 Pfam PPR repeat family 171 214 IPR002885 -
Apr5g0668 536 Pfam E motif 482 529 IPR046848 -
Apr5g0668 536 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Apr5g0668 536 TIGRFAM PPR: pentatricopeptide repeat domain 240 268 IPR002885 -
Apr5g0668 536 TIGRFAM PPR: pentatricopeptide repeat domain 171 202 IPR002885 -
Apr5g0668 536 TIGRFAM PPR: pentatricopeptide repeat domain 270 304 IPR002885 -
Apr5g0668 536 TIGRFAM PPR: pentatricopeptide repeat domain 368 398 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0668 Apr-Chr5 9187330 9189260 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0668 92 534 Glycoside Hydrolase AT3G49170 33.260 3.14e-75 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0668 - - gmx:112997711 889.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0668 5 9187330 9189260 Apr5g0668 5 9187330 9189260 ECH