Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0045 ATGATAGCCACGGCCACGGTAGTAAGGTTCCCTCCAAATCGCACGAGCTTGTGCTCCCAGAAGAAGAAGAATAAAAAGAACAGCAACGAAAATAAAACTTGGAAACAGAGACGGTTGCAAAGCCAACAAAGAAGAAATGCCCTTTCCTTCCCTAAACCGAAATCAACCCCACTCCTTATCCATCACCGACCTCATCCCAAAACAAAACTGGAAGCACTTGAACAAGTCGTCAAAGACCTTGAAGCCTCTGTTGAGAAGGGCATCAAAATTGACCCTGAAATCTATGCTTCTCTGTTAGAAACCTGCTTCCGCTTCCAAGCCATTCACCACGGTATCCGAGTCCATCGCCTTATCCCAACATCACTGTTGCATAAAAATGTTGGTATTTCCTCTAAGCTTCTTAGGTTGTATGCTTCCTGTGGCTATGTCGATGATGCTCACGACCTGTTTGATCAAATGACTAAGAGGGATACGTCTGCATTTCCCTGGAATTCACTCATCTCAGGTTATGCCCAAGTGGGGCTATATGATGATGCCGTTGCACTCTACTTCCAAATGTTGGAAGAGGGTGTTGAACCTGACTTGTTCACCTTCCCAAGGGTTCTCAAAGTTTGCGCCGGAATTGGGTCTGTTCAAGTGGGCCAAGAGGTGCATCGCCATGCCCTTCGTGCTGGCTTTGCTACTGATGGGTTTGTCCTCAATGCACTTGTTGACATGTATTCTAAGTGTGGCGACATTGTAAAGGCTCGAAAGGTCTTTGACAAGATGCCTCATAGGGACTCTGTTTCGTGGAATTCGATGCTCACGGCTTATGTTCATCATGGCCTTGAGGTTGAGGCAATGAACATTTTCCGCCAAATGATTTTGGAAGGGTGTGAACCTGACTCTGTTAGCATATCCACCGTTCTTACAGGGGTGTCATCACTAGGTCTTGGGGTCCAAATTCATGGATGGGTAATCCGGCAAAGACATGAATGGAACCTGTCCATTGCCAATTCCTTGATCATGATGTACTCCAATCATGGTAGGTTAGAAAAGGCACGTTGGATATTCAATCTTATGCCAGAGAGGGATGTTGTTTCTTGGAATTCTATAATATCTGCACACTGCAAACGCCGAGAAGCCCTTGCTTTTTTTGAGCAAATGGAGGAAACTGGTGTTCAGCCTGATAAAATAACGTTTGTTTCAATATTATCAGCTTGTGCCTACTTAGGTTTGGTGAAGGATGGAGAGAGATTGTTTGCTCTAATGTGTGAAAAATATAAAGTAAAACCAATTATGGAACATTATGGTTGTATGGTTAACCTTTATGGAAGAGCAGGACTGATTAAAAAGGCTTATAGCATCATAGTCGATGGAATGGGCTCTGAGGCTGCTGGTCCAACTCTGTGGGGAGCTTTATTGTATGCATGCTTTATGCATGGAGACGCAAAATTAGGGGAGATTGCTGCAAACAGGCTCTTTGATTTAGAGCCAGACAATGAGCATAATTTTGTTCTTCTTATGAGGATTTATAAAAGTGCTGGCAGATTAGAGGACATGGAGAGAGTTAGAATGATGCTGGTTGACAGAGGATTGGATTATTAG 1587 0.4386 MIATATVVRFPPNRTSLCSQKKKNKKNSNENKTWKQRRLQSQQRRNALSFPKPKSTPLLIHHRPHPKTKLEALEQVVKDLEASVEKGIKIDPEIYASLLETCFRFQAIHHGIRVHRLIPTSLLHKNVGISSKLLRLYASCGYVDDAHDLFDQMTKRDTSAFPWNSLISGYAQVGLYDDAVALYFQMLEEGVEPDLFTFPRVLKVCAGIGSVQVGQEVHRHALRAGFATDGFVLNALVDMYSKCGDIVKARKVFDKMPHRDSVSWNSMLTAYVHHGLEVEAMNIFRQMILEGCEPDSVSISTVLTGVSSLGLGVQIHGWVIRQRHEWNLSIANSLIMMYSNHGRLEKARWIFNLMPERDVVSWNSIISAHCKRREALAFFEQMEETGVQPDKITFVSILSACAYLGLVKDGERLFALMCEKYKVKPIMEHYGCMVNLYGRAGLIKKAYSIIVDGMGSEAAGPTLWGALLYACFMHGDAKLGEIAANRLFDLEPDNEHNFVLLMRIYKSAGRLEDMERVRMMLVDRGLDY 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0045 528 Pfam PPR repeat 133 156 IPR002885 -
Aed5g0045 528 Pfam PPR repeat 233 258 IPR002885 -
Aed5g0045 528 Pfam PPR repeat 429 449 IPR002885 -
Aed5g0045 528 TIGRFAM PPR: pentatricopeptide repeat domain 163 194 IPR002885 -
Aed5g0045 528 TIGRFAM PPR: pentatricopeptide repeat domain 232 260 IPR002885 -
Aed5g0045 528 TIGRFAM PPR: pentatricopeptide repeat domain 262 296 IPR002885 -
Aed5g0045 528 TIGRFAM PPR: pentatricopeptide repeat domain 360 390 IPR002885 -
Aed5g0045 528 Gene3D Tetratricopeptide repeat domain 214 310 IPR011990 GO:0005515
Aed5g0045 528 Pfam PPR repeat family 260 306 IPR002885 -
Aed5g0045 528 Pfam PPR repeat family 357 402 IPR002885 -
Aed5g0045 528 Pfam PPR repeat family 163 205 IPR002885 -
Aed5g0045 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 259 IPR002885 -
Aed5g0045 528 MobiDBLite consensus disorder prediction 34 50 - -
Aed5g0045 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Aed5g0045 528 SUPERFAMILY TPR-like 109 287 IPR011990 GO:0005515
Aed5g0045 528 Pfam E motif 474 521 IPR046848 -
Aed5g0045 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Aed5g0045 528 PANTHER OS01G0913400 PROTEIN-RELATED 33 527 - -
Aed5g0045 528 PANTHER - 33 527 - -
Aed5g0045 528 MobiDBLite consensus disorder prediction 13 61 - -
Aed5g0045 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 193 IPR002885 -
Aed5g0045 528 Gene3D Tetratricopeptide repeat domain 68 213 IPR011990 GO:0005515
Aed5g0045 528 Gene3D Tetratricopeptide repeat domain 373 527 IPR011990 GO:0005515
Aed5g0045 528 Gene3D Tetratricopeptide repeat domain 311 372 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0045 Aed-Chr5 365976 367562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0045 84 526 Glycoside Hydrolase AT3G49170 33.040 7.84e-76 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0045 - - gmx:112997711 993.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0045 5 365976 367562 Aed5g0045 5 365976 367562 ECH