Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00052 ATGATAGCAACGCAAACGTTCCCTCGAAATGGCATGAGCTTGTGTTCGGAGAAGAAGAAAAACAAAACTTGGAAACAGAGACGGCGAGAAAGCGAAGAAAGAAGCAACGCTCTCTGTTTCCCAAAACCCAAACCAACCCCACTCCTTATCCGTCACCGACCTCTCCCCCAAACAAAACTCCAAGCTCTTGAACAAGTCCTCACAGACCTTGAATCCTCCGTTGAGAAGGGCATCAGAATCGATCCTGAAATCTATGCCTCTTTGTTAGAAACCTGTTACCGCTTCCAAGCCCTTCGTCACGGTATCCGACTCCACCGCCTCATCCCAACAACCTTGTTGCATCAAAATGTCGGAATCTCCTCCAAGCTTATTAGGTTGTATGCGTCGTATGGTTACTTAGACGATGCCCACGACCTGTTTGATCAAATGACTAAAAGGAATACCTCCGCATTTCCCTGGAATTCACTTATCTCAGGATATGCCCAAGTGGGTCTATACGATGACGCCATTGCACTCTACTTCCAAATGGTGGAAGAGGGTGTTGAACCTGACTTGTTCACCTTCCCTCGGGTTCTCAAAGTTTGTGCCGGAATTGGGTCTGTTCAAGTGGGGGAAGAGGTGCATCGCCACGTGGTTCGTGCTGGCTTTGTCACTAATGTGTTTGTCCTCAATGCACTCGTTGACATGTATTCCAAGTGCGGTGACATTGTAAAGGCTCGAAAGATCTTTGATAAGATGCCACTTAGAGACCCGGTTTCGTGGAATTCGATGCTCACGGCTTATGTTCATCACGGCCTTGAGGTTGGGGCAATGAACATTTTCCGCCAGATGCTTTTGGAAGGCTCTGAACCTGATTCTGTTAGCATATCCACCATTCTCACAGGTGTGTCATCACTAGGTCTTGGGGTCCAAATTCATGGATGGGTAATCCGGCGAGGGCACGAATGGAACTTGTCCATTGCCAATTCCTTGATCACGATGTACTCCAACCATGGCAAGTTGGATAAGGCACGTTGGGTATTCAATCTAATGCCAGAGAGGGATCTTGTTTCGTGGAATTCTATAATATCTGTACATTGCAAACACCGTGAAGCCCTTGCTTATTTTGAGCAAATGGAGGAAGCTGGTGTTGTGCCTGATAAAATAACGTTTGTTTCAGTATTATCAGCTTGTGCCTACTTAGGTTTGGTGAAGGATGGAGAGAGATTGTATACTCTATTGTGTAAAAAGTATAAAATAAACCCAATTATGGAACATTACGGTTGTATGGTTAACCTTTATGGAAGAGCAGGACTGATTAAAAAGGCTTATAGCGTTATAGTCGATGGAATGAACTCTGATGCTGCTGGTCCAACTCTCTGGGGAGCTTTGTTGTATGCCTGTTTCTTGCATGGAGACGCAACTGTAGGGGAGATTGCTGCAAACAGGCTTTTTGATTTAGAGCCAGACAATGAGCATAATTTTGTCCTTCTTATGAGGATATATGAAAATGCAGGCAGATTAGAGGACGTGGAGAGAGTTAGAATGATGCTGGTAAACAGAGGATTGGATTATTAG 1557 0.4509 MIATQTFPRNGMSLCSEKKKNKTWKQRRRESEERSNALCFPKPKPTPLLIRHRPLPQTKLQALEQVLTDLESSVEKGIRIDPEIYASLLETCYRFQALRHGIRLHRLIPTTLLHQNVGISSKLIRLYASYGYLDDAHDLFDQMTKRNTSAFPWNSLISGYAQVGLYDDAIALYFQMVEEGVEPDLFTFPRVLKVCAGIGSVQVGEEVHRHVVRAGFVTNVFVLNALVDMYSKCGDIVKARKIFDKMPLRDPVSWNSMLTAYVHHGLEVGAMNIFRQMLLEGSEPDSVSISTILTGVSSLGLGVQIHGWVIRRGHEWNLSIANSLITMYSNHGKLDKARWVFNLMPERDLVSWNSIISVHCKHREALAYFEQMEEAGVVPDKITFVSVLSACAYLGLVKDGERLYTLLCKKYKINPIMEHYGCMVNLYGRAGLIKKAYSVIVDGMNSDAAGPTLWGALLYACFLHGDATVGEIAANRLFDLEPDNEHNFVLLMRIYENAGRLEDVERVRMMLVNRGLDY 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00052 518 Gene3D Tetratricopeptide repeat domain 400 517 IPR011990 GO:0005515
Cca04g00052 518 Gene3D Tetratricopeptide repeat domain 203 300 IPR011990 GO:0005515
Cca04g00052 518 MobiDBLite consensus disorder prediction 15 36 - -
Cca04g00052 518 PANTHER OS01G0913400 PROTEIN-RELATED 24 517 - -
Cca04g00052 518 Pfam PPR repeat family 348 392 IPR002885 -
Cca04g00052 518 Pfam PPR repeat family 153 195 IPR002885 -
Cca04g00052 518 Pfam PPR repeat family 250 296 IPR002885 -
Cca04g00052 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Cca04g00052 518 PANTHER - 24 517 - -
Cca04g00052 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Cca04g00052 518 Gene3D Tetratricopeptide repeat domain 58 202 IPR011990 GO:0005515
Cca04g00052 518 MobiDBLite consensus disorder prediction 1 36 - -
Cca04g00052 518 Gene3D Tetratricopeptide repeat domain 301 399 IPR011990 GO:0005515
Cca04g00052 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 284 IPR002885 -
Cca04g00052 518 Pfam E motif 464 515 IPR046848 -
Cca04g00052 518 Pfam PPR repeat 123 147 IPR002885 -
Cca04g00052 518 Pfam PPR repeat 223 247 IPR002885 -
Cca04g00052 518 Pfam PPR repeat 419 440 IPR002885 -
Cca04g00052 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 249 IPR002885 -
Cca04g00052 518 TIGRFAM PPR: pentatricopeptide repeat domain 222 247 IPR002885 -
Cca04g00052 518 TIGRFAM PPR: pentatricopeptide repeat domain 350 380 IPR002885 -
Cca04g00052 518 TIGRFAM PPR: pentatricopeptide repeat domain 153 184 IPR002885 -
Cca04g00052 518 TIGRFAM PPR: pentatricopeptide repeat domain 252 286 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00052 Cca-Chr4 483882 485663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00052 74 516 Glycoside Hydrolase AT3G49170 31.938 1.47e-71 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00052 - - gmx:112997711 909.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00052 04 483882 485663 Cca04g00052 04 483882 485663 ECH