Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g2438 ATGATAGGCTCGTTGCTATATCTCCGTTTCTCTCCAACTCGTATTACAATCTTCTCTGCCAACGCCAATAAAAGCAACAAAACTAAGAAACAGCGAAAACAATGGCGAATCCAAGAAAACCGAAACACTCTCTCTTTCCCAAAACCCACTCCAACCCCACTTCTCATCCATCACCAACCTTACACTCTAACCAAAACCCAAGCTCTCGAACAAGTTATCAAAGATCTAGAATCATCCGTTGAGAAAGGCATCAAAATCGACACCGAAATCTACGCTTCTCTCTTAGAAACTTGCTTCCGCTTGCAAGCCATTGAGCACGGCATCCGAATTCACCGTCTCATCCCCATTACCCTTTTGCGAAGAAATGTTGGGATTTCATCGAAACTTCTCAGACTGTATGCGTCATGTGGGTACATGGATGAAGCCCACGACCTGTTTGATCAAATGTCTAAGAGAAACGAGTCTGCGTTTCCGTGGAATTCGCTTATCTCTGGGTATGCTGAAGTGGGTCTCCATGATGATGCCATAGCACTATACTTTCAAATGGTGGAAGAGGGTGTCCAACCTGACATGTTCACGTTCCCGAGGGTTCTAAAAGCTTGTGGGGGAATTGGGTCTGTTCAAGTGGGTGAGGAAGTACATAGGCATGTGGCTCGTTCTGGGTTTTCCAATGATGGGTTTGTGCTCAATGCGTTGGTAGACATGTATGCTAAGTGTGGTGACATTGTGAAGGCCAGAAAGGTATTTGACAAAATGCCTCAGAGAGATTCTGTTTCATGGAATTCAATGCTCACAGCTTATATACATCATGGCCTGGAGGTTGAGGCAATAAGCATATTCAAGCAGATGCTTTTACAAAGGTATGAACCTGACTCTGTTGCCATATCCACAGTTCTTAGTGGTGTGCCATCACTGGATGTTGCGGTTCAAGTTCACGGATGGGCAATTCGACGAGGAATCGAATGGAACTTGTCCATTGCCAATTCATTGATCATAGTGTACTCCAATCATGGTAAGTTGGATCAAGCACGTTGGATATTTGATCTAATGCCTGAGAAGGATGTTGTTTCATGGAACTCTATAATATCTGCTCATTGCAAAAACAGAGAAGCCCTTGATTATTTTGTGAAAATGGAGGAATCTGATGCAAAACCTGATAAAATAACATTTGTTTCAGTTTTATCTGCTTGTGCCCATTTGGGTTTTGTGAAGGATGGAGAGAGgttgttttcattgatgagtgaaaaatatagaataagaCCTATTATGGAACATTATGGTTGTATGGTTAATCTTTATGGAAGAGCAGGACTGATTCAAAAGGCTTATAGTTTCATAGTTGACAGAATAGAGTTGGAGGCTGGTCCTACTGTATGGGGAGCTTTGTTATATGCTTGCTCTCTTCATGGAAATGTAACAATAGGAGAGGTTGCTGCTAACAAGCTTTTTGATTTGGAGCCTGACAATGAACATAATTTTAAGCTGCTTATGAAGATCTATGAAGATGCAGGCAGGTCAGAGGATATGGAGAGAATTAGAATGATGCTAGTCGACAGAGGATTGGATTATTGA 1572 0.4141 MIGSLLYLRFSPTRITIFSANANKSNKTKKQRKQWRIQENRNTLSFPKPTPTPLLIHHQPYTLTKTQALEQVIKDLESSVEKGIKIDTEIYASLLETCFRLQAIEHGIRIHRLIPITLLRRNVGISSKLLRLYASCGYMDEAHDLFDQMSKRNESAFPWNSLISGYAEVGLHDDAIALYFQMVEEGVQPDMFTFPRVLKACGGIGSVQVGEEVHRHVARSGFSNDGFVLNALVDMYAKCGDIVKARKVFDKMPQRDSVSWNSMLTAYIHHGLEVEAISIFKQMLLQRYEPDSVAISTVLSGVPSLDVAVQVHGWAIRRGIEWNLSIANSLIIVYSNHGKLDQARWIFDLMPEKDVVSWNSIISAHCKNREALDYFVKMEESDAKPDKITFVSVLSACAHLGFVKDGERLFSLMSEKYRIRPIMEHYGCMVNLYGRAGLIQKAYSFIVDRIELEAGPTVWGALLYACSLHGNVTIGEVAANKLFDLEPDNEHNFKLLMKIYEDAGRSEDMERIRMMLVDRGLDY 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g2438 523 PANTHER OS01G0913400 PROTEIN-RELATED 29 522 - -
Sto7g2438 523 Pfam PPR repeat 129 153 IPR002885 -
Sto7g2438 523 Pfam PPR repeat 229 255 IPR002885 -
Sto7g2438 523 Pfam PPR repeat 425 445 IPR002885 -
Sto7g2438 523 PANTHER - 29 522 - -
Sto7g2438 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 155 189 IPR002885 -
Sto7g2438 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Sto7g2438 523 TIGRFAM PPR: pentatricopeptide repeat domain 159 190 IPR002885 -
Sto7g2438 523 TIGRFAM PPR: pentatricopeptide repeat domain 228 256 IPR002885 -
Sto7g2438 523 TIGRFAM PPR: pentatricopeptide repeat domain 258 291 IPR002885 -
Sto7g2438 523 TIGRFAM PPR: pentatricopeptide repeat domain 129 153 IPR002885 -
Sto7g2438 523 Pfam E motif 469 516 IPR046848 -
Sto7g2438 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 255 IPR002885 -
Sto7g2438 523 Gene3D Tetratricopeptide repeat domain 207 302 IPR011990 GO:0005515
Sto7g2438 523 Gene3D Tetratricopeptide repeat domain 62 206 IPR011990 GO:0005515
Sto7g2438 523 Gene3D Tetratricopeptide repeat domain 369 521 IPR011990 GO:0005515
Sto7g2438 523 Gene3D Tetratricopeptide repeat domain 303 368 IPR011990 GO:0005515
Sto7g2438 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Sto7g2438 523 SUPERFAMILY TPR-like 116 284 IPR011990 GO:0005515
Sto7g2438 523 Pfam PPR repeat family 353 398 IPR002885 -
Sto7g2438 523 Pfam PPR repeat family 256 302 IPR002885 -
Sto7g2438 523 Pfam PPR repeat family 159 201 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g2438 Sto-Chr7 29900160 29901731 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g2438 61 521 Glycoside Hydrolase AT3G49170 30.608 3.08e-75 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g2438 - - gmx:112997711 802.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g2438 7 29900160 29901731 Sto7g2438 7 29900160 29901731 ECH