Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0627 ATGGAGATTCACGAAGCCCTCGCTCGCTCCTCCATGATCAGAAACGTGCTGCCCAGACATGAGCAAGGGGGCATATTTGCGGCAGACGGCTATGCTCGCGCTTCCGGACGCCCTGGTGTCTGCCTCACCTCCTCTGGTCCAGGCGCCGCTAATATTATCAGCGGCATTGCGGATGCAAACTTCGATAGCATACCCATCGTGGCCATTACTGGGCAGGTCCCACGAGGCTTGATGGGAACCGATGCCTTCCAAGAAGTCCCACTTATTGATATAACTCGACTGATCACAAAGTCCAATTATTTAGTTCTTGATGTTGAAGACATTCCTCGCATAGTTAAAGAAGCCTTTCTCCTTGCAACTTCAGGCTGA 369 0.5176 MEIHEALARSSMIRNVLPRHEQGGIFAADGYARASGRPGVCLTSSGPGAANIISGIADANFDSIPIVAITGQVPRGLMGTDAFQEVPLIDITRLITKSNYLVLDVEDIPRIVKEAFLLATSG* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0627 122 CDD TPP_PYR_POX_like 1 122 - -
Vvi16g0627 122 Gene3D - 1 122 - -
Vvi16g0627 122 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 1 122 IPR029061 -
Vvi16g0627 122 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 2 121 IPR012001 GO:0030976
Vvi16g0627 122 FunFam Acetolactate synthase 1 122 - -
Vvi16g0627 122 PANTHER THIAMINE PYROPHOSPHATE ENZYMES 1 122 IPR045229 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0627 Vvi-Chr16 12718497 12718865 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0627 K01652 - vvi:100246801 231.106