Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1906 ATGATAGCCACGCTGGTAAGGTTCCCTCCAAATCGAATGAGCTTGTGCTCGCAGAAGAAGAATAAGAAGAAAAACATCAACGAAAACAAAACTTGGAAACAGAGAAGGTTGGAAAGCCAAGAAAGAAGAAACGGTCTTTCCTTCCCAAAGCCCAAATCAACCCCACTCCTTATCCATCACCGTCCTCATCCCAAAACTAAATTGGAAGCACTTGAACAAGTCGTCAAAGACCTTGAAGCCTCTGTTGAAAAGGGCATCAAAATTGACCCGGAAATCTATGCCTCTCTGTTAGAAACCTGCTATCGCTTCCAAGCCATTCTTCACGGTATCCGAGTCCATCGCCTTATCCCAACATCCCTGTTGCATAAAAATGTCGGCATTTCCTCTAAGCTTCTTAGGTTGTATGCTTCGTGTGGTTATCTGGATGATGCCCACGACCTGTTTGATCAAATGGCTAAGAGGGATACGTCTGCATTTCCCTGGAATTCACTCATCTCAGGATATGCTCAAGTGGGCCACTACGATGAGGCCATTGCACTCTACTTCCAAATGGTGGAAGAGGGTGTGGAAGCCGACTTGTTCACTTTCCCTAGGGTTCTCAAAGTTTGCGCAGGAATTGGGTCTGTTCAAGTGGGGGAAGAGGTGCATCGCCATGCGATTCGTGCTGGCTTTGCCGCTGATGGGTTTATCCTCAATGCACTTGTTGACATGTATTCTAAGTGCGGTGACATTGTAAAGGCTCGAAAGGTCTTTGATAAGATGCCTCATAGAGACCCTGTTTCGTGGAATTCAATGCTCACAGCTTATGTTCATCACGGCCTCGAGGTTCAGGCAATGAACATTTTCCGCCAAATGCTTTTAGAAGGGTGTGAACCTGACTCTGTTAGCATATCCACTGTTCTTACAGGGGTGTCATCACTAGGTCTTGGGGTCCAAATTCATGGATGGGTAATCAGTCAAGGACATGAATGGAACTTGTCCATAGCTAATTCCTTGATCATGATGTACTCCAATCATGGTAGGTTAGAAAAGGCACGTTGGGTATTCAATCTAATGCCAGAGAGGGATGTTGTTTCGTGGAATTCTATAATATCTGCACATTGCAAACGTCGAGAAGCCCTTGCTTTTTTTGAGCAAATGGAGGGAGCTGGTGTTCAGCCTGATAAAATAACATTCGTTTCAATATTATCAGCTTGTGCCTACTTAGGTTTGTTGAAGGATGGAGAGAGATTGTTTGCCCTAATGTGTGGAAAATATAAAATAAAACCAATTATGGAACATTATGGTTGTATGGTTAACCTTTATGGAAGAGCAGGACTGATTAAAAAGGCTTATAGCATCATAGTCGATGGAATTGGCACTGAGGCTGCTGGTCCAACTCTGTGGGGAGCTTTATTATATGCCTGCTTTATGCACGGAGACGCAACTATAGGGGAGATTGCTGCAAACTGGCTTTTTGATTTAGAGCCAGACAATGAGCATAATTTTGTACTTCTTATGAGGATTTATGAAAATGCAGGCAGATTAGAGGACATGGAGAGAGTTAGAATGATGCTGGTTGACAGAGGATTGGATTATTAG 1581 0.4371 MIATLVRFPPNRMSLCSQKKNKKKNINENKTWKQRRLESQERRNGLSFPKPKSTPLLIHHRPHPKTKLEALEQVVKDLEASVEKGIKIDPEIYASLLETCYRFQAILHGIRVHRLIPTSLLHKNVGISSKLLRLYASCGYLDDAHDLFDQMAKRDTSAFPWNSLISGYAQVGHYDEAIALYFQMVEEGVEADLFTFPRVLKVCAGIGSVQVGEEVHRHAIRAGFAADGFILNALVDMYSKCGDIVKARKVFDKMPHRDPVSWNSMLTAYVHHGLEVQAMNIFRQMLLEGCEPDSVSISTVLTGVSSLGLGVQIHGWVISQGHEWNLSIANSLIMMYSNHGRLEKARWVFNLMPERDVVSWNSIISAHCKRREALAFFEQMEGAGVQPDKITFVSILSACAYLGLLKDGERLFALMCGKYKIKPIMEHYGCMVNLYGRAGLIKKAYSIIVDGIGTEAAGPTLWGALLYACFMHGDATIGEIAANWLFDLEPDNEHNFVLLMRIYENAGRLEDMERVRMMLVDRGLDY* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1906 526 MobiDBLite consensus disorder prediction 21 45 - -
Gso9g1906 526 Gene3D Tetratricopeptide repeat domain 309 419 IPR011990 GO:0005515
Gso9g1906 526 SUPERFAMILY TPR-like 116 286 IPR011990 GO:0005515
Gso9g1906 526 Pfam E motif 472 519 IPR046848 -
Gso9g1906 526 MobiDBLite consensus disorder prediction 17 59 - -
Gso9g1906 526 Pfam PPR repeat 427 447 IPR002885 -
Gso9g1906 526 Pfam PPR repeat 231 256 IPR002885 -
Gso9g1906 526 Pfam PPR repeat 131 154 IPR002885 -
Gso9g1906 526 Gene3D Tetratricopeptide repeat domain 63 211 IPR011990 GO:0005515
Gso9g1906 526 Gene3D Tetratricopeptide repeat domain 212 308 IPR011990 GO:0005515
Gso9g1906 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
Gso9g1906 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 191 IPR002885 -
Gso9g1906 526 PANTHER OS01G0913400 PROTEIN-RELATED 31 525 - -
Gso9g1906 526 PANTHER - 31 525 - -
Gso9g1906 526 Pfam PPR repeat family 161 203 IPR002885 -
Gso9g1906 526 Pfam PPR repeat family 355 400 IPR002885 -
Gso9g1906 526 Pfam PPR repeat family 258 304 IPR002885 -
Gso9g1906 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 257 IPR002885 -
Gso9g1906 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 325 359 IPR002885 -
Gso9g1906 526 TIGRFAM PPR: pentatricopeptide repeat domain 358 388 IPR002885 -
Gso9g1906 526 TIGRFAM PPR: pentatricopeptide repeat domain 231 256 IPR002885 -
Gso9g1906 526 TIGRFAM PPR: pentatricopeptide repeat domain 161 192 IPR002885 -
Gso9g1906 526 TIGRFAM PPR: pentatricopeptide repeat domain 260 294 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1906 Gso-Chr9 43446345 43448242 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1906 82 524 Glycoside Hydrolase AT3G49170 32.379 2.62e-71 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1906 - - gmx:112997711 1060.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso9g1906 9 43446345 43448242 Gso9g1906 9 43446345 43448242 ECH