Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0051 ATGATAAGCATACTAGTAAGGTTCCCTCCAAATGCCCTGAGCTTGTGCTCCCAGAAGAAAAATAAAAACAAAAATAGCAACGAAAAGAAAACATGGAAAGAGAGACGCTTGGAAGGCCAAGAAAGAAGAAACGTTCTTCGTTATCCAAAACCCAAATCAACCCCACTCCTTATCCATCGCCGTCCTCCTCCCCAAACCCAATTGGAAGCACTTGAACAAGTCATCACAAACCTTGAAGACTCTGTTGAGAAGGGCATCAGAATCGACCCTGAAATATATGCCTCTTTATTAGAAATTTGCTATCGCTTGCAAGCCATTCGTCTCGGTATTAGAGTCCACCGCCTTATCCCAACATCCCTGTTGCGTAGAAATTTTGGCATCTCTTCCAAGCTTCTTAGATTGTATGCGGCGTGTGGGTACGTGGACGATGCCCATGAGCTGTTTGATCAAATGTCTAATAGGGACAAGTCTGCATTTCCCTGGAATTCGCTCATTTCAGGGTATGCCCAAATGGGCCTCTATGACGATGCCATTGCACTCTACTTCCAAATGGTAGAAGAGGGTGTTGAACCTGACTTTTTCACCTTCCCGAGAGTTCTCAAAGTTTGCGCTGGAATTGGGTCTGTTCGACTGGGGGAAGAAGTGCATCGCCATTTGGTTCGTGCTGGATTTGCCACTGATGGGTTTGTGCTTAATGCACTTGTTGACATGTATTCGAAGTGCGGTGACATTGTAAAGGCACGAAAGATCTTTGACAAGATGCCTCATAGAGACCCTATTTCGTGGAATTCTATGCTCACTGCCTATGTTCATCATGGCCTTGAGATTGGGGCATCGAACATTTTCCGCCAAATGATTTTGGAAGGGTGTGAACCTGATTCTGTTAGCATATCCACCATTCTTACAGGTGTGTCTTCGCTATGTCTAGGCGTCCAAATTCATGGATGGGTGATTCGGCGAGGACTTGAATGGAACCTTTCCATAGCTAATTCCTTGATGGTGATGTACTCCAGTCATGGTAGGTTAGAAAGGGCATGTTGGATATTCAATCTAATGCCAGAGAGGGATGTTGTTTCGTGGAACTCTATAATATCTGCACATTGCAAGCGCCGAGAAGCCCTTGCCTTTTTGGAGCAAATGGAGGAAGCTGGTGTTGAGCCTGATAAAATAACGTTTGTTTCGATATTATCAGCCTGTGCTCACTTAGTCTTGGTGAAGGAGGGAGAGAGAGTGTTTTCTCTAATGTGCAAAAAATATAAAATAAAACCAATTATGGAACATTATGGTTGTATGGTTAACCTTTATGGAAGAGCAGGACTAATTAAAAAGGCTTATAGCATCATAGTGGATGGAATGGGCTTTGAGGCTGCAGGTCCAACTCTTTGGGGAGCTTTATTGTATGCCTGCTTTTTGCATGGAGACGCAACTATAGGGGAGATTGCTGCAAACAGGCTCTTTGATTTGGAGCCAGACAACGAGCAGAACTTTGTACTTCTTATGGGGATTTATGAAAATGCATGCAGATTAGAGGACATGGAGAGAGTTAGAATGATGATGGTTGACAGAGGACTGGATTATTAG 1581 0.4383 MISILVRFPPNALSLCSQKKNKNKNSNEKKTWKERRLEGQERRNVLRYPKPKSTPLLIHRRPPPQTQLEALEQVITNLEDSVEKGIRIDPEIYASLLEICYRLQAIRLGIRVHRLIPTSLLRRNFGISSKLLRLYAACGYVDDAHELFDQMSNRDKSAFPWNSLISGYAQMGLYDDAIALYFQMVEEGVEPDFFTFPRVLKVCAGIGSVRLGEEVHRHLVRAGFATDGFVLNALVDMYSKCGDIVKARKIFDKMPHRDPISWNSMLTAYVHHGLEIGASNIFRQMILEGCEPDSVSISTILTGVSSLCLGVQIHGWVIRRGLEWNLSIANSLMVMYSSHGRLERACWIFNLMPERDVVSWNSIISAHCKRREALAFLEQMEEAGVEPDKITFVSILSACAHLVLVKEGERVFSLMCKKYKIKPIMEHYGCMVNLYGRAGLIKKAYSIIVDGMGFEAAGPTLWGALLYACFLHGDATIGEIAANRLFDLEPDNEQNFVLLMGIYENACRLEDMERVRMMMVDRGLDY* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0051 526 PANTHER - 32 525 - -
Vra2g0051 526 SUPERFAMILY TPR-like 107 265 IPR011990 GO:0005515
Vra2g0051 526 Gene3D Tetratricopeptide repeat domain 210 307 IPR011990 GO:0005515
Vra2g0051 526 Gene3D Tetratricopeptide repeat domain 308 418 IPR011990 GO:0005515
Vra2g0051 526 Pfam PPR repeat family 161 203 IPR002885 -
Vra2g0051 526 Pfam PPR repeat family 355 400 IPR002885 -
Vra2g0051 526 PANTHER OS01G0913400 PROTEIN-RELATED 32 525 - -
Vra2g0051 526 Pfam E motif 472 523 IPR046848 -
Vra2g0051 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
Vra2g0051 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 325 359 IPR002885 -
Vra2g0051 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 257 IPR002885 -
Vra2g0051 526 Gene3D Tetratricopeptide repeat domain 66 209 IPR011990 GO:0005515
Vra2g0051 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 191 IPR002885 -
Vra2g0051 526 TIGRFAM PPR: pentatricopeptide repeat domain 230 256 IPR002885 -
Vra2g0051 526 TIGRFAM PPR: pentatricopeptide repeat domain 260 294 IPR002885 -
Vra2g0051 526 TIGRFAM PPR: pentatricopeptide repeat domain 358 388 IPR002885 -
Vra2g0051 526 TIGRFAM PPR: pentatricopeptide repeat domain 161 192 IPR002885 -
Vra2g0051 526 Pfam PPR repeat 131 153 IPR002885 -
Vra2g0051 526 Pfam PPR repeat 231 256 IPR002885 -
Vra2g0051 526 Pfam PPR repeat 260 290 IPR002885 -
Vra2g0051 526 Pfam PPR repeat 427 447 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0051 Vra-Chr2 453297 455786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0051 80 524 Glycoside Hydrolase AT3G49170 33.333 1.69e-76 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0051 - - gmx:112997711 895.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0051 2 453297 455786 Vra2g0051 2 453297 455786 ECH