Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03398 ATGGGTTCCGCTTCTCTTCTCAATTCTTCCGATTCATCTCAACAAgGTGTAAAGGACAACAATAGTGTAGAGGAACCTGTTGTTTCGAACACCCAAGAGGAAGTTATGGCTGGTGGGAAACAAAAGAAGCGAGGTTTGTCAGAGAGTGGTGAGCAGCCCGCTCCTACTCGTAAAATGCCAAAACGATCAGTGAGTGCTGCACGCAAAAATTTGAAGGAGCAGACTTTTTCCATAATGGACAAATCATCTCTTATTGAGACAAAGCAGGATCAGATTGTAGAAGAAGAATTTCTGGCTGTCCGTATGACTGCTGGACAGGACGATGGCCGACCAAATAGAAGACTTACAGACTTTATCCTTCATGATGAAACTGGTGCAACGCAGCCACTTGAGATGCTTGAAATCAACGATTTATTCATCACTGGACTTATATTGCCACTTGAAGGAAGTGCAGACAAGAAAAAAGAGCAAGGTGTTAGATGTGAAGGCTTTGGTCGAATTGAGTCATGGGATATATCTGGCTATGAAGATGGCTCTCCAGTGATATGGATTTCCACTGATATTGCTGATTACGATTGCCAGAAAGCAGCTGcaagttataaaaaatattacgaTCATTTCTTTGAAAAGGCACGTGCTTGCTTAGAAGTATACAAAAAACTAGCAAAGTCTTCCGGTGGAGACCCTGAAATAAGTCTTGACGAGTTACTTGCTGGCATGGCACGGTCAATGAGTGGTAGCAAGTACTTTTCTGGAACTGCGTCTTTAAAGGAGTTCATTATTTCTCAGGGCGAGTTTATTTATAAGCAGCTCATTGGTTTAGAGTTGAAGGGAAATGACAAGGGGTTTGAAGACATTCCTGCTCTGATTGCCCTTAGAGATGAGAGCAAAAAACAAGCAAACTTTGCAAGTGCACAAGTGATGCCATCAAATGCGACTTTAAGGATTGGTTCGGGAACTGGAGAtgaggagaaaaagaatcagATGGATTCTGTAGATGGAGAAGATGAGGATGCGAAGTTAGCGCGACTATTGCAGGAAGAAGAGAATTGGAATTCTCGGAAGCAAAGGAAAAACCCTAGGTCATCCTCTTCATCTAACAAATTCTATATCAAAATTAATGAAGATGAGATTGCCAATGATTACCCTCTCCCTGCTTATTACAAAACTTCTCTTCAAGAAACAGATGAGTTTATTGTTTTTGATAATGACTATGACGTATATGACATTGAAGATCTTCCTAGAAGCATGCTGCATAATTGGGCTTTATACAACTCTGATTCTAGATTGATTTCTTTGGAACTTCTTCCTATGAAATCTTGCTCAGAGATAGATGTTACAATCTTTGGATCAGGCCTAATGACGGCAGATGATGGAAGTGGGTTCCATCTCGATACAGAGGCAGGCCAATCTTCCAGTGCTTCTGGAGCACAGACCACTGATGGAATTCCAATTTATCTGAGTGCCATAAAGGAATGGATGATTGAATTTGGGTCGTCTATGGTTTTCATATCCATCCGAACTGATATGGCCTGGTATAGACTTGGGAAACCGTCAAAGCAGTACGCTCCTTGGTATGACACAGTATTGAAAACTGCAAGGATTGCTATAAGCATTATCACACTGTTAAAGGAGCAGAGCCGTGTATCGAGACTTTCCTTTGCAgatgtcataaaaaaattatctgaGTATAAGCAAGATCATAAGTCCTACATTTCTACTGATCCAATGGCTGTTGAGAGATACATTGTTGTCCATGGACAGATAATTCTGCAACTGTTTGCAGAATTTCCAGATGACAAGATCAGGAAGTCTGCTTTTGTGATTGGTCTTGCTACAAAAATGGAAGAACGACACCATACCAAATGgttagtgaagaagaagaaagtgatgCCAAGGAGTGAGCCAAATTTAAATCCTAGGGCAGCAATGGCTCCTGTTGTATCCAAAAGGAAAGCTATGCAAGCTACAACCACAAAGCTGATCAATAGAATATGGGGAGAGTATTACTCAAACCACTTGCCGGAGGATTTGAAAGAAGGAACTAATAGTGAAGTgaaggatgatgatgaagtaGATGAACAAGAACAGGAAGAGAATGAAGATGAGGATGCGGATGAGGAGGAGACGGTACTGTTGGAGGGAACACAAAAGCCGTGCTCAGTTTCCAAAGAAACTAAAGCATTTTCTGATGAAGGAGAAATTAGATGGGAAGGGGGTCCTGAAGGGAAGACCAGTTCCGGATGCCTTCTTTATAAGCAGGCACTTATTCATGGGGAAGTTGTTTCTGTTGGAATATCTGTGTCAGTGGAAGTTGATGAATCCGATGAACTTCCTGATATATATTACATTGAATATATAGATGAGAGCAAAAAACAAGCAAACTTTGCAAGCGCACAAGTGATGCCATCAAATGCGACTTTAAGGATTGGTTCTGGAAGTGGAGATGAAGAGAAAAAGAATCAGATGGATTCTgtagatgaagaagatgaggatGCGAAGTTAGCGCGACTTTTGCAGGAAGAAGAGGATTGGAAATCACGGAAGCAGAGGAAAAACCCTAGATCATCCTCTTCATCTAACAAATTCTATATCAAAATTAATGAAGATGAGATTGCCAATGATTACCCTCTCCCTGCTTATTACAAAACTTCTCTTCAAGAAACAGATGAGTTTATTGTTTTTGATAATGACTATGACTTAGAGGAAGCTGAAAAGGAGAAAGAGATTTTCAAAGTAAATTTATCCAAGTCTAGTTTTGTATTCGAGGGAACTGAATATTCTCTGAATGACTATGTTTATGTCAGTCCTTTTGAATTTGAGGAAAGGATAGAGCAGGGGACTCATAAGAGTGGGAGGAATGTAGGGTTGAAAGCTTATGTTGTGTGCCAAGTGCTTGAGATCATTGTcaaaaaggaaacaaaacaaGCTGAAATAAAATCTACAGAGCTCAAAGTCAGAAGATTTTTCCGACCAGAAGATGTATCAAGTGAGAAGGCATACTGCTCTGATGTACAAGAGGTGTATTACAGTGATGAAACACATACAATCTCTGTACAGTCCATAGAGGGTAGATGCGAAGTCAGGAAAAAGATTGATGTCCCTGAAGGATGTGCCCCTGGAGGAATCTTCCAGAATGTCTTTTTCTGCGAGCACTTGTATGATCCTTCCACTGGATCCCTCAAGAAGTTGCCAGCTCATATTAAAGTCAAATATTCTAGTGGACATGCAGCTGATGCTGCAGCCagaaagaaaaagggaaaatgTAAAGAAGGAGATAGCATCTCAGAGCCTGATCTtgaaataaaaacatcaaatgaAAAACGGTTAGCAACCTTGGACATATTTGCAGGTTGTGGTGGCTTATCAGAGGGGCTGCACCAGTCAGGTGTTTCATCAACTAAATGGGCTATTGAGTATGAAGAACCAGCTGGGAATGCGTTTAAAGCTAATCATCCTGAAGCATTGGTGTTTATTGACAATTGCAATGTTATTCTTAGGGCTATAATGGAGAAATGTGGGGACATAGAGGATTGTATCTCAACGACCGAGGCTGCAGAATTGGCCTCTAAACTTGATGAGAAGGATTTGAGTAATTTACCCTTGCCTGGGCAAGTTGATTTCATTAATGGGGGTCCTCCATGCCAGGGTTTCTCAGGAATGAATCGATTTAACACAAGCACTTGGAGTAAAGTCCAGTGCGAGATGATATTAGCATTCTTATCCTTTGCTGATTATTTCCGGCCAGGGTATTTCCTGTTGGAGAATGTGAGGAATTTTGTGTCTTTTAATAAAGGACAGACGTTCCGTTTAACTTTGGCGTCACTTCTTGAGATGGGTTATCAGGTGAGGTTTGGTATTCTTGAGGCTGGAGCTTTTGGCGTTTCACAGTCACGAAAAAGGGCATTCATATGGGCTGCCTCTCCAGAAGATGTGCTTCCTGAGTGGCCAGAACCAATGCATGTCTTTTCAGCCCCcgaattgaaaatcaaattgtCCGAAAATGTCCAGTATGCTGCTGTTCGTAGTACTGCAAATGGTGCCCCGTTGCGTGCAATAACGGTTAGAGATACCATTGGTGAACTCCCAGCTGTAGGCAATGGAGCCTCTAGGACAAACATGGAGTATCAAAGCGATCCCGTTTCCTGGTTTCAAAAGAAGGTTCGCGGCAATATGGCTGTGCTGACCGATCATATATCAAAGGAAAtgaatgagctgaacttgattCGTTGCCAGAAAATTCCAAAGAAACCAGGTTGTGATTGGCGTGATCTTCCAGATGAAAAGATAAAACTGTCTAATGGACAACTGGTTGATTTGATACCATGGTGCTTGCCAAACACAGCTAAGAGGCATAACCAATGGAAAGGACTCTTTGGTAGGTTGGATTGGCAAGGGAATTTCCCAACTTCCATTACCGACCCTCAACCTATGGGGAAGGTTGGAATGTGCTTCCATCCGGACCAAGATCGAATTCTCACAGTTCGTGAATGTGCCCGATCTCAAGGCTTCCCAGATTGCTATGAGTTTTATGGAAACATTATTCACAAGCATAGGCAGATTGGAAATGCTGTTCCTCCTCCTCTTGCATTTGCTTTAGGGTTGAAACTCAAGGAAGCAGTGAACAAG 4629 0.4007 MGSASLLNSSDSSQQGVKDNNSVEEPVVSNTQEEVMAGGKQKKRGLSESGEQPAPTRKMPKRSVSAARKNLKEQTFSIMDKSSLIETKQDQIVEEEFLAVRMTAGQDDGRPNRRLTDFILHDETGATQPLEMLEINDLFITGLILPLEGSADKKKEQGVRCEGFGRIESWDISGYEDGSPVIWISTDIADYDCQKAAASYKKYYDHFFEKARACLEVYKKLAKSSGGDPEISLDELLAGMARSMSGSKYFSGTASLKEFIISQGEFIYKQLIGLELKGNDKGFEDIPALIALRDESKKQANFASAQVMPSNATLRIGSGTGDEEKKNQMDSVDGEDEDAKLARLLQEEENWNSRKQRKNPRSSSSSNKFYIKINEDEIANDYPLPAYYKTSLQETDEFIVFDNDYDVYDIEDLPRSMLHNWALYNSDSRLISLELLPMKSCSEIDVTIFGSGLMTADDGSGFHLDTEAGQSSSASGAQTTDGIPIYLSAIKEWMIEFGSSMVFISIRTDMAWYRLGKPSKQYAPWYDTVLKTARIAISIITLLKEQSRVSRLSFADVIKKLSEYKQDHKSYISTDPMAVERYIVVHGQIILQLFAEFPDDKIRKSAFVIGLATKMEERHHTKWLVKKKKVMPRSEPNLNPRAAMAPVVSKRKAMQATTTKLINRIWGEYYSNHLPEDLKEGTNSEVKDDDEVDEQEQEENEDEDADEEETVLLEGTQKPCSVSKETKAFSDEGEIRWEGGPEGKTSSGCLLYKQALIHGEVVSVGISVSVEVDESDELPDIYYIEYIDESKKQANFASAQVMPSNATLRIGSGSGDEEKKNQMDSVDEEDEDAKLARLLQEEEDWKSRKQRKNPRSSSSSNKFYIKINEDEIANDYPLPAYYKTSLQETDEFIVFDNDYDLEEAEKEKEIFKVNLSKSSFVFEGTEYSLNDYVYVSPFEFEERIEQGTHKSGRNVGLKAYVVCQVLEIIVKKETKQAEIKSTELKVRRFFRPEDVSSEKAYCSDVQEVYYSDETHTISVQSIEGRCEVRKKIDVPEGCAPGGIFQNVFFCEHLYDPSTGSLKKLPAHIKVKYSSGHAADAAARKKKGKCKEGDSISEPDLEIKTSNEKRLATLDIFAGCGGLSEGLHQSGVSSTKWAIEYEEPAGNAFKANHPEALVFIDNCNVILRAIMEKCGDIEDCISTTEAAELASKLDEKDLSNLPLPGQVDFINGGPPCQGFSGMNRFNTSTWSKVQCEMILAFLSFADYFRPGYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPEDVLPEWPEPMHVFSAPELKIKLSENVQYAAVRSTANGAPLRAITVRDTIGELPAVGNGASRTNMEYQSDPVSWFQKKVRGNMAVLTDHISKEMNELNLIRCQKIPKKPGCDWRDLPDEKIKLSNGQLVDLIPWCLPNTAKRHNQWKGLFGRLDWQGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDCYEFYGNIIHKHRQIGNAVPPPLAFALGLKLKEAVNK 1543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03398 1543 PRINTS Cytosine-specific DNA methyltransferase signature 1111 1127 IPR001525 GO:0008168
Tsu06g03398 1543 PRINTS Cytosine-specific DNA methyltransferase signature 1294 1307 IPR001525 GO:0008168
Tsu06g03398 1543 PRINTS Cytosine-specific DNA methyltransferase signature 1248 1262 IPR001525 GO:0008168
Tsu06g03398 1543 CDD BAH_plantDCM_II 920 1122 - -
Tsu06g03398 1543 MobiDBLite consensus disorder prediction 676 709 - -
Tsu06g03398 1543 PIRSF DNMT1 1433 1543 IPR017198 GO:0003886|GO:0005634|GO:0090116
Tsu06g03398 1543 PIRSF DNMT1 907 1439 IPR017198 GO:0003886|GO:0005634|GO:0090116
Tsu06g03398 1543 PIRSF DNMT1 7 225 IPR017198 GO:0003886|GO:0005634|GO:0090116
Tsu06g03398 1543 PIRSF DNMT1 690 954 IPR017198 GO:0003886|GO:0005634|GO:0090116
Tsu06g03398 1543 PIRSF DNMT1 290 689 IPR017198 GO:0003886|GO:0005634|GO:0090116
Tsu06g03398 1543 TIGRFAM dcm: DNA (cytosine-5-)-methyltransferase 1113 1534 IPR001525 GO:0008168
Tsu06g03398 1543 Pfam Cytosine specific DNA methyltransferase replication foci domain 411 563 IPR022702 -
Tsu06g03398 1543 Pfam Cytosine specific DNA methyltransferase replication foci domain 108 240 IPR022702 -
Tsu06g03398 1543 PANTHER DNA (CYTOSINE-5)-METHYLTRANSFERASE 1B 788 898 - -
Tsu06g03398 1543 PANTHER DNA (CYTOSINE-5)-METHYLTRANSFERASE 1B 235 790 - -
Tsu06g03398 1543 PANTHER DNA (CYTOSINE-5)-METHYLTRANSFERASE 1B 903 1542 - -
Tsu06g03398 1543 MobiDBLite consensus disorder prediction 687 709 - -
Tsu06g03398 1543 ProSiteProfiles C-5 cytosine-specific DNA methylase (Dnmt) domain profile. 1110 1543 IPR001525 GO:0008168
Tsu06g03398 1543 ProSitePatterns C-5 cytosine-specific DNA methylases C-terminal signature. 1519 1537 IPR031303 -
Tsu06g03398 1543 ProSiteProfiles BAH domain profile. 925 1065 IPR001025 GO:0003682
Tsu06g03398 1543 Gene3D Vaccinia Virus protein VP39 1115 1318 IPR029063 -
Tsu06g03398 1543 MobiDBLite consensus disorder prediction 319 336 - -
Tsu06g03398 1543 Pfam C-5 cytosine-specific DNA methylase 1112 1538 IPR001525 GO:0008168
Tsu06g03398 1543 MobiDBLite consensus disorder prediction 807 832 - -
Tsu06g03398 1543 MobiDBLite consensus disorder prediction 813 832 - -
Tsu06g03398 1543 MobiDBLite consensus disorder prediction 1 70 - -
Tsu06g03398 1543 Pfam BAH domain 926 1065 IPR001025 GO:0003682
Tsu06g03398 1543 Gene3D - 727 811 IPR043151 -
Tsu06g03398 1543 ProSitePatterns C-5 cytosine-specific DNA methylases active site. 1207 1219 IPR018117 -
Tsu06g03398 1543 MobiDBLite consensus disorder prediction 313 336 - -
Tsu06g03398 1543 SMART BAH_4 925 1065 IPR001025 GO:0003682
Tsu06g03398 1543 PANTHER CYTOSINE-SPECIFIC METHYLTRANSFERASE 788 898 - -
Tsu06g03398 1543 PANTHER CYTOSINE-SPECIFIC METHYLTRANSFERASE 235 790 - -
Tsu06g03398 1543 PANTHER CYTOSINE-SPECIFIC METHYLTRANSFERASE 903 1542 - -
Tsu06g03398 1543 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1112 1539 IPR029063 -
Tsu06g03398 1543 Gene3D DNA Methylase, subunit A, domain 2 1438 1503 - -
Tsu06g03398 1543 Gene3D DNA Methylase, subunit A, domain 2 1360 1437 - -
Tsu06g03398 1543 Gene3D - 900 1114 IPR043151 -
Tsu06g03398 1543 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03398 Tsu-Chr6 44912733 44945969 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03398 K00558 - gmx:100797667 2300.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g03398 06 44912733 44945969 Tsu06g03398 06 44912733 44945969 ECH