Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2496 ATGGTATCCGAGTTCACCGCCTTATTCCAACGACCCTTTTGCGCAAAAACGTTGGAATCTCTTCCAAGCTTCTCAGGTTATATGCTTCTTGTGGTTATATGGATGAGGCACATGACCTGTTTGATCAAATGCCTAAGAGGGATGAACATGCGTTTCCATGGAATTCACTCATCGCAGGGTATGCTCAAGTTGGCCTCTATCATGATGCCATTGCACTCTACTTCCAAATGGTGGAAGAGCGTGTTGAACCCGACGTGTTCACGTTCCCTCGTGTTCTCAAGGCTTGTGCGGGAATTGGGTCGGTTCAAGTTGGGGAAGAGGTCCATCGCCACGCGATTTCGTTCTGGTTTTGCCAATGATGGGTTTGTCCTCAATGCACTCCTTGACATGTATTCTAAGTGTGGTGACATTGTGAAGGCCCGAAAGATCTTTCACAAGATGCCTCATAGAGATTCTGTTTCATGGAATTCAATGCTTGCAGCTTACGTACATCATGGCCTTGAGGTAGCGGCAATCAACGCTTTCCGCCAAATGGTTTTGGAAGGTTATGAACCTGATTCTGTTTCCATATCCAAAATCCTTACTGGGGTGTCATCATTGGATCTTGGGGTCCAAATTCATGGATGGGTGATCCGGCGTGGGGTTGAGTGGAACTTGTCCATTGCTAATTCCTTGATCATAGTGTACTCCAATAATGGCAAGTTGGATAAGGCATGTTGGATATTCAATGTGATGCCAGAGAGGGATGTTGTGTCATGGAATTCTATAATATCTGCTAATTCCAAATGCAAGGAAGCCCTTGCTTATTTTGAGCAAATGGACCATTCTGGTGCAAGACCTGATAAAGTAACATTTGTTTCAGTATTATCAGCTTGTGCTTATTTAGGTTTGGTGAAGGATGGGGAGAGGTTGTTTGCTTTGATGTGTGGGAAATATAAAATAGAACCAATTATGGAACATTATGGTTGCATGGTTAACCTTTATGGAAGAGCAGGCCAGATTAAAAAGGCTTATAGCATCATAGTCGACAGAATGGACTCTGAGGCTGCTGGTCCAACTCTTTGGGGAGCTTTGTTGTATGCCTGCTTTTTGCATGGAGATGTTACAATGGGGGAGATTGCTGCAAACAAGCTTTTTGATTTGGAGCCAGACAATGAACATAATTTTGTACTCCTTATGAAAATCTATGAAAATGCAGGCAGGTCAGAGGACGTGGAGAGAGTTAGGATGATGCTGGTTGAAAGAGGATTGGATTATTAG 1260 0.4365 MVSEFTALFQRPFCAKTLESLPSFSGYMLLVVIWMRHMTCLIKCLRGMNMRFHGIHSSQGMLKLASIMMPLHSTSKWWKSVLNPTCSRSLVFSRLVRELGRFKLGKRSIATRFRSGFANDGFVLNALLDMYSKCGDIVKARKIFHKMPHRDSVSWNSMLAAYVHHGLEVAAINAFRQMVLEGYEPDSVSISKILTGVSSLDLGVQIHGWVIRRGVEWNLSIANSLIIVYSNNGKLDKACWIFNVMPERDVVSWNSIISANSKCKEALAYFEQMDHSGARPDKVTFVSVLSACAYLGLVKDGERLFALMCGKYKIEPIMEHYGCMVNLYGRAGQIKKAYSIIVDRMDSEAAGPTLWGALLYACFLHGDVTMGEIAANKLFDLEPDNEHNFVLLMKIYENAGRSEDVERVRMMLVERGLDY* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2496 419 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 151 185 IPR002885 -
Dod03g2496 419 PANTHER - 98 418 - -
Dod03g2496 419 TIGRFAM PPR: pentatricopeptide repeat domain 123 151 IPR002885 -
Dod03g2496 419 TIGRFAM PPR: pentatricopeptide repeat domain 153 187 IPR002885 -
Dod03g2496 419 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
Dod03g2496 419 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 120 150 IPR002885 -
Dod03g2496 419 Pfam PPR repeat 320 340 IPR002885 -
Dod03g2496 419 Pfam PPR repeat 251 277 IPR002885 -
Dod03g2496 419 Pfam PPR repeat 124 149 IPR002885 -
Dod03g2496 419 Pfam PPR repeat 223 249 IPR002885 -
Dod03g2496 419 Pfam PPR repeat 283 310 IPR002885 -
Dod03g2496 419 Pfam PPR repeat family 151 197 IPR002885 -
Dod03g2496 419 Gene3D Tetratricopeptide repeat domain 200 296 IPR011990 GO:0005515
Dod03g2496 419 Gene3D Tetratricopeptide repeat domain 297 418 IPR011990 GO:0005515
Dod03g2496 419 Gene3D Tetratricopeptide repeat domain 106 199 IPR011990 GO:0005515
Dod03g2496 419 Pfam E motif 365 412 IPR046848 -
Dod03g2496 419 PANTHER OS01G0913400 PROTEIN-RELATED 98 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2496 Dod-Chr3 56490203 56492227 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2496 103 417 Glycoside Hydrolase AT3G49170 32.399 3.95e-52 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2496 - - gmx:112997711 529.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2496 03 56490203 56492227 Dod03g2496 03 56490203 56492227 ECH