Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3303 ATGTGGAGACGCGCAACCAAATCATTCCTTTTCCTTCCAGTCCTGGAAGCTTCTAAACACAACGCTTCGCTTTCCCAAAGATTTACCACTGGATTCCCCTTGCACACGCACTTCCAGGAAAAGGATGGGAAACAAGTAGCTCCGGTtataacttttgttttagGAGGCCCTGGTAGTGGAAAAGGTACACAATGTGCAAAAATTGTTGAAACCTTTGGATTTAAGCATCTGAGTGCTGGAGATCTTTTGAGAAGGGAGATGGTTTCTGATAGTGAATATGGCTCAATGATTCTGAATACAATTAGAGAAGGAAGAATTGTTCCATCGGAAGTGACTGTCAAATTGATTCTAAGAGAGATGGAATCAAGTGACAATCATAAGTTTCTTATTGATGGTTTCCCTAGAAGCGAGGAGAACCGCGTAGCTTTTGAACAAATTATTGAAGCAGAACCACAAATGGTACTTTTCTTTGATTGCCCTGAAGAAGAGATGGTGAAGCGTGTGCTGAGCCGTAATCAGGGTCGAATTGATGACAACATAGAAACAATCAAGAAACGTCTTAAAGTATTTGAGGCATTAAATCTTCCTGTGATTGATTATTATGCTAAGAAAGGGAAACTTTACAGGATCAACGCAGTGGGAACAGTAGATGAAATATTTGAGCAAGTTCGGCCAGTTTTTGAGGCTTGTgaggtatatattatttattgttatttctatAACGTTAGTTACAAATGCTTAGGAAGCATGATGCTTCGCACACAATTGCTTCTTCATGGTCATGCTTACTAG 792 0.3864 MWRRATKSFLFLPVLEASKHNASLSQRFTTGFPLHTHFQEKDGKQVAPVITFVLGGPGSGKGTQCAKIVETFGFKHLSAGDLLRREMVSDSEYGSMILNTIREGRIVPSEVTVKLILREMESSDNHKFLIDGFPRSEENRVAFEQIIEAEPQMVLFFDCPEEEMVKRVLSRNQGRIDDNIETIKKRLKVFEALNLPVIDYYAKKGKLYRINAVGTVDEIFEQVRPVFEACEVYIIYCYFYNVSYKCLGSMMLRTQLLLHGHAY 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3303 263 CDD ADK 52 219 IPR000850 GO:0005524|GO:0006139|GO:0019205
Ssu3g3303 263 TIGRFAM UMP_CMP_kin_fam: UMP-CMP kinase family 50 227 IPR006266 GO:0004127|GO:0006207|GO:0006221|GO:0009041
Ssu3g3303 263 Hamap UMP-CMP kinase [CMPK1]. 48 230 IPR006266 GO:0004127|GO:0006207|GO:0006221|GO:0009041
Ssu3g3303 263 Gene3D - 44 230 IPR027417 -
Ssu3g3303 263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 227 IPR027417 -
Ssu3g3303 263 PRINTS Adenylate kinase signature 192 206 IPR000850 GO:0005524|GO:0006139|GO:0019205
Ssu3g3303 263 PRINTS Adenylate kinase signature 52 65 IPR000850 GO:0005524|GO:0006139|GO:0019205
Ssu3g3303 263 PRINTS Adenylate kinase signature 175 190 IPR000850 GO:0005524|GO:0006139|GO:0019205
Ssu3g3303 263 PRINTS Adenylate kinase signature 80 94 IPR000850 GO:0005524|GO:0006139|GO:0019205
Ssu3g3303 263 PRINTS Adenylate kinase signature 128 144 IPR000850 GO:0005524|GO:0006139|GO:0019205
Ssu3g3303 263 Pfam Adenylate kinase 53 205 - -
Ssu3g3303 263 PANTHER UMP-CMP KINASE 50 237 - -
Ssu3g3303 263 PANTHER NUCLEOTIDE KINASE 50 237 IPR000850 GO:0005524|GO:0006139|GO:0019205
Ssu3g3303 263 Hamap Adenylate kinase [adk]. 49 228 IPR000850 GO:0005524|GO:0006139|GO:0019205
Ssu3g3303 263 ProSitePatterns Adenylate kinase signature. 128 139 IPR033690 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3303 Ssu-Chr3 89663503 89666926 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3303 K13800 - gmx:100777369 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3303 3 89663503 89666926 Ssu3g3303 3 89663503 89666926 ECH