Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3302 ATGGCTAACAGGGATACATCTGCATTTCCCTGGAATTCACTCATCTCAGGATATGCCCAACTGGGCCTTTATGATGATGCCATTGCACTCTACTTCCAAATGGTGGAAGAGAGTGTTGAACCCGACGTGTTCACGTTCCCTCGGGTTCTCAAAGTTTGTGCGGGAATTGGGTCTGTTCAAGTGGGGGAAGAGGTGCATCGCCACGTAGTTCGTGCTGGCTTTGCCAATGATGGGTTTGTCCTCAACGCACTTGTTGACATGTATTCTAAGTGCGGTGACATTGTAAAGGCTCGAAAGATCTTTGACAAGATGCCTCATAGAGACCCCGTTTCGTGGAATTCGATGCTCACAGCTTATGTTCATCATGGCCTAGAGGTTGTGGCAATGAACATTTTCCGCCAAATGCTTTTGGAAGGGTTTGAACCTGACTCTGTTAGCATATCCACCATTCTTACAGGTGTGTCATCACTAGGTCTCGGGGTCCAAATTCATGGATGGGTAATCCGGCGAGGACGTGAATGGAACTCGTCCATTGCTAATTCCTTGATCATGATGTACTCCAATCATGGCAAGTTGGATAAGGCAAGTTGGATATTCAATCTTATGCCAGAGAGGGATGTTGTTTCGTGGAATTCTATAATATCTGCACATTGCAAACACCGTGCAGCCCTTGCTTATTTTGAGCAAATGGAGGAAGCAGGTGTTGGGCCCGATAAAGTAACATTTGTTTCGATATTATCAGCTTGTGCCTACTTAGGTATGGTGAAGGATGGAGAGAGATTGTTTGCTCTaatgtgtgaaaaatataaagtaaaaccAATTATGGAACATTATGGCTGTATGGTTAACCTTTATGGAAGAGCAGGGCTGATTAAAAAAGCTTATAGCATCATAGTTGATGGAATGGACGCTGAGGCTGCTGGTCCAACTCTCTGGGGAGCTTTATTGTATGCCTGCTTTTTGCACGGAGACGCAACTATAGGGGAGATTGCTGCAAACAGGCTCTTTGATTTAGAGCCAGACAATGAGCATAACTTTGTGCTTCTTATGAGGATTTATGAAAATGCAGGCAGATTAGAGGACATGGAGAGAGTTAGAATGATGCTGGTTGACAGAGGATTGGATTATTAG 1131 0.4377 MANRDTSAFPWNSLISGYAQLGLYDDAIALYFQMVEESVEPDVFTFPRVLKVCAGIGSVQVGEEVHRHVVRAGFANDGFVLNALVDMYSKCGDIVKARKIFDKMPHRDPVSWNSMLTAYVHHGLEVVAMNIFRQMLLEGFEPDSVSISTILTGVSSLGLGVQIHGWVIRRGREWNSSIANSLIMMYSNHGKLDKASWIFNLMPERDVVSWNSIISAHCKHRAALAYFEQMEEAGVGPDKVTFVSILSACAYLGMVKDGERLFALMCEKYKVKPIMEHYGCMVNLYGRAGLIKKAYSIIVDGMDAEAAGPTLWGALLYACFLHGDATIGEIAANRLFDLEPDNEHNFVLLMRIYENAGRLEDMERVRMMLVDRGLDY 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3302 376 Pfam PPR repeat family 205 250 IPR002885 -
Ssu3g3302 376 Pfam PPR repeat family 11 53 IPR002885 -
Ssu3g3302 376 Pfam PPR repeat family 108 154 IPR002885 -
Ssu3g3302 376 Gene3D Tetratricopeptide repeat domain 158 270 IPR011990 GO:0005515
Ssu3g3302 376 PANTHER OS01G0913400 PROTEIN-RELATED 1 375 - -
Ssu3g3302 376 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Ssu3g3302 376 Pfam PPR repeat 277 297 IPR002885 -
Ssu3g3302 376 Pfam PPR repeat 81 106 IPR002885 -
Ssu3g3302 376 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 108 142 IPR002885 -
Ssu3g3302 376 Pfam E motif 322 369 IPR046848 -
Ssu3g3302 376 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 7 41 IPR002885 -
Ssu3g3302 376 Gene3D Tetratricopeptide repeat domain 8 157 IPR011990 GO:0005515
Ssu3g3302 376 TIGRFAM PPR: pentatricopeptide repeat domain 80 106 IPR002885 -
Ssu3g3302 376 TIGRFAM PPR: pentatricopeptide repeat domain 240 273 IPR002885 -
Ssu3g3302 376 TIGRFAM PPR: pentatricopeptide repeat domain 208 238 IPR002885 -
Ssu3g3302 376 TIGRFAM PPR: pentatricopeptide repeat domain 110 144 IPR002885 -
Ssu3g3302 376 TIGRFAM PPR: pentatricopeptide repeat domain 11 43 IPR002885 -
Ssu3g3302 376 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 77 107 IPR002885 -
Ssu3g3302 376 PANTHER - 1 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3302 Ssu-Chr3 89660078 89661208 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3302 5 374 Glycoside Hydrolase AT3G49170 34.392 2.20e-71 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3302 - - gmx:112997711 699.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3302 3 89660078 89661208 Ssu3g3302 3 89660078 89661208 ECH