Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi16g0609 . . . . Adu03g01026 . Aed5g0048 . Aev04g3740 . Ahy13g1256 . Aip03g01375 . . . . . . . Arst3g01319 . Bach9g01486 . . . . Bva07g00839 . . Cca04g00055 Cca06g01718 . . Dod03g2499 . . . . . Gma09g02126 . . . Gso9g1903 . . . . . . . . . . . . . . . Lapu11g01113 . . . . . . . . . . . . . Mal7g1153 . . . . . . . Mtr4g1046 . . . Phco9g00091 . . . Psa2g4081 . . . . . . . Pumo11g02277 . Pvu11g0054 . Rops3g00071 . Seca6g00106 . Spst2g02970 . Ssu3g3300 Ssu2g2773 . . Tpr4g1178 . . . Tsu06g00917 . Vian5g01858 . . . Vimu5g02828 . Viun11g03005 . Vivi7g05020 . Vra2g0055 .
Vvi16g0610 . . . . . . Aed5g0047 . . . . . . . . . . . Apr5g0665 . . . . . . . . Bva07g00838 . Car06g03120 Cca04g00054 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal7g1151 . . . . . . . Mtr4g1045 . . . . . . . . . . . . . . . . . . . . . . . . . Ssu3g3301 . Sto7g2435 . Tpr4g1177 . . . Tsu06g00916 . . . . . . . . . . . Vra2g0054 .
Vvi16g0611 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g0612 . . . . Adu03g01027 . . . Aev04g3741 . Ahy13g1257 . Aip03g01376 . . . Amo13g1626 . Apr5g0666 . . . . . . . . Bva07g00835 . . . . . . Dod03g2498 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g00090 . . . . . . . . . . . Pumo11g02278 . Pvu11g0053 . Rops3g00070 . Seca6g00105 . Spst2g02971 . . . Sto7g2436 . . . . . . . Vian5g01859 . . . Vimu5g02829 . Viun11g03006 . Vivi7g05016 . . .
Vvi16g0613 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g0048 . Mal7g1150 . . . . . . . Mtr4g1044 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr4g1176 . . . Tsu06g00915 . . . . . . . . . . . . .
Vvi16g0614 . . . . Adu03g01028 . . . Aev04g3742 . Ahy13g1258 . Aip03g01377 . . . . . . . Arst3g01321 . Bach9g01488 . . . . Bva07g00834 . Car06g03121 . . . . Dod03g2497 . . . . . Gma09g01506 . . . Gso9g1300 . . . Lal1g0018 . . . . . Lan13g0026 . . . . . Lapu11g01114 . . . . . . . . . . . Lja2g2520 . . . . . . . . . . . Phac11g00070 . Phco9g00089 . . . . . . . Pte1g00868 . . . . . Pvu11g0052 . . . . . Spst2g02972 . . . . . . . . . . . . . . . Vimu5g02830 . . . . . . .
Vvi16g0615 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g0616 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g0617 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva07g00833 . . . . . . . . . . . . Gma09g02127 . . . Gso9g1904 . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g0047 . . . . . . . . . Mtr4g1043 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr4g1175 . . . Tsu06g00914 . . . . . . . . . . . . .
Vvi16g0618 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 2271 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi16g0609 Chr16 12323891 12324499 -
Adu Adu03g01026 Chr03 10689198 10690282 +
Aed Aed5g0048 Chr5 375624 376220 -
Aev Aev04g3740 Chr04 34722436 34723074 +
Ahy Ahy13g1256 Chr13 14688349 14689302 +
Aip Aip03g01375 Chr03 14182847 14183137 +
Arst Arst3g01319 Chr3 11119483 11120400 +
Bach Bach9g01486 Chr9 13589598 13590197 +
Bva Bva07g00839 Chr07 10396505 10397357 -
Cca Cca04g00055 Chr04 503453 504799 -
Cca Cca06g01718 Chr06 32509294 32510193 -
Dod Dod03g2499 Chr03 56513035 56514133 -
Gma Gma09g02126 Chr09 46808226 46809218 +
Gso Gso9g1903 Chr9 43428181 43429147 +
Lapu Lapu11g01113 Chr11 13236503 13238222 +
Mal Mal7g1153 Chr7 36373221 36373814 -
Mtr Mtr4g1046 Chr4 13487675 13488562 -
Phco Phco9g00091 Chr9 604088 605375 -
Psa Psa2g4081 Chr2 418544456 418545043 -
Pumo Pumo11g02277 Chr11 55376150 55377201 +
Pvu Pvu11g0054 Chr11 389913 391198 -
Rops Rops3g00071 Chr3 907802 908779 -
Seca Seca6g00106 Chr6 2808854 2809477 -
Spst Spst2g02970 Chr2 29468037 29468648 +
Ssu Ssu3g3300 Chr3 89623771 89624373 +
Ssu Ssu2g2773 Chr2 88500554 88501180 -
Tpr Tpr4g1178 Chr4 11256566 11257408 -
Tsu Tsu06g00917 Chr06 8235763 8237344 -
Vian Vian5g01858 Chr5 40688761 40689390 +
Vimu Vimu5g02828 Chr5 37593487 37594098 +
Viun Viun11g03005 Chr11 41323967 41325054 -
Vivi Vivi7g05020 Chr7 134948809 134949563 -
Vra Vra2g0055 Chr2 467621 468408 -
Vvi Vvi16g0610 Chr16 12343547 12344155 -
Aed Aed5g0047 Chr5 372166 372771 -
Apr Apr5g0665 Chr5 9157158 9158258 +
Bva Bva07g00838 Chr07 10389109 10389788 -
Car Car06g03120 Chr06 56613446 56614567 +
Cca Cca04g00054 Chr04 495288 496233 -
Mal Mal7g1151 Chr7 36284830 36285423 -
Mtr Mtr4g1045 Chr4 13473078 13473976 -
Ssu Ssu3g3301 Chr3 89647726 89648361 +
Sto Sto7g2435 Chr7 29856215 29856805 +
Tpr Tpr4g1177 Chr4 11252147 11252986 -
Tsu Tsu06g00916 Chr06 8227975 8228691 -
Vra Vra2g0054 Chr2 463271 464348 -
Vvi Vvi16g0611 Chr16 12348116 12356797 -
Vvi Vvi16g0612 Chr16 12359487 12360092 -
Adu Adu03g01027 Chr03 10698672 10699331 +
Aev Aev04g3741 Chr04 34725760 34726401 +
Ahy Ahy13g1257 Chr13 14702162 14703022 +
Aip Aip03g01376 Chr03 14193526 14196689 +
Amo Amo13g1626 Chr13 22138823 22148564 +
Apr Apr5g0666 Chr5 9181114 9181755 +
Bva Bva07g00835 Chr07 10363624 10364465 -
Dod Dod03g2498 Chr03 56503280 56503639 -
Phco Phco9g00090 Chr9 598809 599423 -
Pumo Pumo11g02278 Chr11 55379813 55380460 +
Pvu Pvu11g0053 Chr11 382584 384001 -
Rops Rops3g00070 Chr3 895274 895891 -
Seca Seca6g00105 Chr6 2759103 2759693 -
Spst Spst2g02971 Chr2 29475956 29476573 +
Sto Sto7g2436 Chr7 29865323 29873355 +
Vian Vian5g01859 Chr5 40692021 40692605 +
Vimu Vimu5g02829 Chr5 37597861 37598487 +
Viun Viun11g03006 Chr11 41328658 41329515 -
Vivi Vivi7g05016 Chr7 134678941 134679926 -
Vvi Vvi16g0613 Chr16 12380477 12381079 +
Lja Lja3g0048 Chr3 534344 539131 -
Mal Mal7g1150 Chr7 36272653 36273267 -
Mtr Mtr4g1044 Chr4 13461302 13462231 -
Tpr Tpr4g1176 Chr4 11247614 11248641 -
Tsu Tsu06g00915 Chr06 8222576 8223428 -
Vvi Vvi16g0614 Chr16 12473268 12473738 +
Adu Adu03g01028 Chr03 10709813 10710562 +
Aev Aev04g3742 Chr04 34728123 34728722 +
Ahy Ahy13g1258 Chr13 14709742 14710628 +
Aip Aip03g01377 Chr03 14199186 14199973 +
Arst Arst3g01321 Chr3 11140197 11140828 +
Bach Bach9g01488 Chr9 13606400 13606990 +
Bva Bva07g00834 Chr07 10357216 10357944 -
Car Car06g03121 Chr06 56621464 56622676 +
Dod Dod03g2497 Chr03 56494476 56495090 -
Gma Gma09g01506 Chr09 39831613 39832907 +
Gso Gso9g1300 Chr9 36600799 36602152 +
Lal Lal1g0018 Chr1 188537 189082 -
Lan Lan13g0026 Chr13 131354 132044 -
Lapu Lapu11g01114 Chr11 13239863 13242196 +
Lja Lja2g2520 Chr2 32778545 32779849 +
Phac Phac11g00070 Chr11 494887 495800 -
Phco Phco9g00089 Chr9 595272 595865 -
Pte Pte1g00868 Chr1 16914723 16915325 -
Pvu Pvu11g0052 Chr11 379275 380007 -
Spst Spst2g02972 Chr2 29478362 29480358 +
Vimu Vimu5g02830 Chr5 37601460 37602044 +
Vvi Vvi16g0615 Chr16 12483376 12486156 -
Vvi Vvi16g0616 Chr16 12486945 12487176 -
Vvi Vvi16g0617 Chr16 12509104 12509739 +
Bva Bva07g00833 Chr07 10352105 10352746 -
Gma Gma09g02127 Chr09 46815869 46816717 +
Gso Gso9g1904 Chr9 43434523 43435457 +
Lja Lja3g0047 Chr3 530183 531158 -
Mtr Mtr4g1043 Chr4 13452762 13453799 -
Tpr Tpr4g1175 Chr4 11236705 11237586 -
Tsu Tsu06g00914 Chr06 8205843 8206869 -
Vvi Vvi16g0618 Chr16 12514323 12516145 +