Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0024 ATGATAGTCACTGTTCAATTCCCTCCAACCTATTTGTGCTCTTTGAAAAAGAATAACAAGAAAAGTAAAATAAGTAGGAAACTTAGGAAGTGGCTAAGCCAAGAATGTAACAACAACAACATTAACACTCTTTCTTTCCCTAAATCCAAACCAACCCCACTTCTCATCCATCATAAACCTTATACCCAAACAAAGTTCCAAGCACTTGAACTAGTCCTCAAAGACATTGAAGCCTCTTTTGATAAAGGTATCCAAATTGACCCTGAACTCTATGCTTCTTTGTTAGAAACATGCTACAATATGCAAGCCATTCATTGTGGTATTCGACTTCATCGCCTTATCCCACCAACCCTTTTGCATAAAAATATTGGCATCTCCTCAAAGCTTGTTAGGTTATATGCTTCATATGGGTACATGGATGAGGCACACCAACTGTTTGATAAAATGTCTAACAGGGGTGATTCTGCATTTCCATGGAACTCACTTATTTCAGGTTATGCTCAAATGGGTCTCTATCACGATGCCATTGCACTCTATTTCCAAATGGTGGAAGAGGGTGTTGAACCTGACCTTTTCACCTTCCCCCGGGTCCTTAAAGCTTGTGGTGGAATTGGGTCCCTTCAAGTTGGGGAAGAGGTGCATCGTCATGTGGTTCGTCATGGATTGTCTCATGATGTGTTTGTCCTCAATGCATTAGTTGACATGTATTCTAGGTGTGGGGACATTGTTAAGGCTCAAAAGGTCTTTAACATCATGCGTCGTAGAGACTCTGTTTCATGGAACTCAATGCTTGCAGCTTATATTCATCATGGCCTTGAGGTTGAGGCAGTCAACATTTTTCGCCAAATGATTTTGGAAGCTTATGAACCTGACTCCGTTTCCATATCGAAAGTTCTCACAGGTGTGTCGTCACTGCACCTCGGGGCCCAAATTCATGGATGGGTGATACGGCGAGGGGTTCAATGGAACTTGTCCATTGCTAATTCCTTGATCATAGTGTATGCCAGTCACGGGAAGTTGCATAAGGTGCGTTGGATATTCAATCAAATGCCGGAGAGGGATGTCATTTCTTGGAATTCTATAATATATGCTCATCGCAAACACCGAAAAGCCCTAGCTTATTTTGAGCAAATGGAGGAAGCTGGTGTGGAGCCTGATAAGATAACATTTGTTTCACTGTTATCAGCTTGTGCCTATTTAGGTTTGGCGAAGGATGGAGAGAGATTGTTTGGTTTAATGTGTGAAAAATATAAAATAAAACCAATCATGGAACATTATGGGTGTATGGTTAACCTTTATGGAAGAGCAGGACGGATTAAAAAGGCTTATAGCATCATAGTTGACACAATGGATTCTGAGGGTGTTGGTCCAACTGTGTGGGGAGCTTTATTATATGCCTGCTTTTTGCATGGAAATGTAAGTATAGGAGAGATTGCTGCAAACAAGCTTTTTGATTTGGAACCGGACAGCGAACACAATTTCGTACTTCTTATGAAGATCTATGAAAATGCAGGCAGATCAGAGGACATGGAGAGAGTTAGAATGATGCTGGTCCACAGAGGATTGTATTATTAG 1575 0.4114 MIVTVQFPPTYLCSLKKNNKKSKISRKLRKWLSQECNNNNINTLSFPKSKPTPLLIHHKPYTQTKFQALELVLKDIEASFDKGIQIDPELYASLLETCYNMQAIHCGIRLHRLIPPTLLHKNIGISSKLVRLYASYGYMDEAHQLFDKMSNRGDSAFPWNSLISGYAQMGLYHDAIALYFQMVEEGVEPDLFTFPRVLKACGGIGSLQVGEEVHRHVVRHGLSHDVFVLNALVDMYSRCGDIVKAQKVFNIMRRRDSVSWNSMLAAYIHHGLEVEAVNIFRQMILEAYEPDSVSISKVLTGVSSLHLGAQIHGWVIRRGVQWNLSIANSLIIVYASHGKLHKVRWIFNQMPERDVISWNSIIYAHRKHRKALAYFEQMEEAGVEPDKITFVSLLSACAYLGLAKDGERLFGLMCEKYKIKPIMEHYGCMVNLYGRAGRIKKAYSIIVDTMDSEGVGPTVWGALLYACFLHGNVSIGEIAANKLFDLEPDSEHNFVLLMKIYENAGRSEDMERVRMMLVHRGLYY* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0024 524 Pfam PPR repeat 229 255 IPR002885 -
Lan13g0024 524 Pfam PPR repeat 258 284 IPR002885 -
Lan13g0024 524 Pfam PPR repeat 129 153 IPR002885 -
Lan13g0024 524 Pfam PPR repeat 425 445 IPR002885 -
Lan13g0024 524 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Lan13g0024 524 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 457 IPR002885 -
Lan13g0024 524 Pfam E motif 470 517 IPR046848 -
Lan13g0024 524 Gene3D Tetratricopeptide repeat domain 206 307 IPR011990 GO:0005515
Lan13g0024 524 Gene3D Tetratricopeptide repeat domain 308 402 IPR011990 GO:0005515
Lan13g0024 524 Gene3D Tetratricopeptide repeat domain 403 522 IPR011990 GO:0005515
Lan13g0024 524 TIGRFAM PPR: pentatricopeptide repeat domain 258 291 IPR002885 -
Lan13g0024 524 TIGRFAM PPR: pentatricopeptide repeat domain 159 190 IPR002885 -
Lan13g0024 524 TIGRFAM PPR: pentatricopeptide repeat domain 426 458 IPR002885 -
Lan13g0024 524 TIGRFAM PPR: pentatricopeptide repeat domain 365 386 IPR002885 -
Lan13g0024 524 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 155 189 IPR002885 -
Lan13g0024 524 Pfam PPR repeat family 159 201 IPR002885 -
Lan13g0024 524 Pfam PPR repeat family 354 398 IPR002885 -
Lan13g0024 524 Gene3D Tetratricopeptide repeat domain 66 205 IPR011990 GO:0005515
Lan13g0024 524 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 255 IPR002885 -
Lan13g0024 524 PANTHER OS01G0913400 PROTEIN-RELATED 31 522 - -
Lan13g0024 524 PANTHER - 31 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0024 Lan-Chr13 125062 126840 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0024 83 522 Glycoside Hydrolase AT3G49170 32.373 7.32e-74 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0024 - - mtr:MTR_3g063220 766.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan13g0024 13 125062 126840 Lan13g0024 13 125062 126840 ECH