Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0046 ATGATAGGCACTCTAAGCTTCCCTCCAAATCCCACTACCTTGTGCTCTGCTAAGAAGAACACCAACAAAGATAAAAGCAAGAAATACAGAAAGTGGCAAAGTGAAGATAGAAGCAACACTCTTTCTTTCCCAAAACCAAAATCAACCCCACTCCTCATCCATCAACAACCTTATCCCCAAACTAAACACCAAGCAATTGAACAAGTACTCAAAGACATTGAAGCTTCTATAGAGAAAGGCATCAGAATTGACCCAGAAATCTATGCTTCTTTGCTAGAAACCTGCTACCGTTCCCAAGCCATTCGTCATGGTATCCAAGTTCACCGCCTCATACCTACAGTCCTTTTGCGTAAGAATGTTGGCGTCACCTCCAAGCTTGTGAGGTTGTACGCTTCTTTTGGGTACATGGAAGATGCCCACGACCTGTTTGATCAAATGTCTCAGAGGGATGCATCTGCATTTCCCTGGAATTCTCTTATCTCAGGGTATGCTCAACTGGGTCTCTATGATGATGCCATTGCGCTCTACTTCCAAATGGTGGAAGAGGGTGTGGAGCCTGACTTGTTCACGTTTCCTCGAGTTCTGAAAGTTTGTGCAGGACTAGGGTTACTTGAAGTTGGGGAGGAGGTGCATCGCCATGCGGTTCGTTCTGGTTTTGGCAATGATGGGTTTGTCCTCAATGCACTGGTTGACATGTATGCTAAGTGCGGTCACATTGTAAAGGCTCGAAAGATCTTTAACAGGATGCATCGTAGAGACTCCGTTTCATGGAATTCAATGCTCACAGCTTATGTTCATCATGGCCTTGAGGTTGAGGCAATGGACACTTTCTGCCAAATGGTTTTGGAAGGGTGTAAACCTGATTTTGTTTCCATATCCACGATTCTCACAGGTGTCTCATCAATGGATCTCGGGGTCCAAATTCATGGGTGGGTGATCAGGCGAGGAGTTGAATGGAACTTGTCCATTGCTAATTCCTTGATCATAGCTTACTCCAAACATGGAAGGTTGGATACAGCGCGTTGGTTATTCAATTTAATGCCAGAAAGGGATGTTGTTTCCTGGAATTCTATAATATCTGCTCATTGCAAACACCGAGAAGCCCTTGCTCTTTTTGAGCAAATGGAGGAAGCTGGTGTAAAGCCTGATAAAATAACATTTGTTTCACTACTATCAGCTTGTGCCTATTTGGGTTTGGTGAATGATGGAGTGAGGTTGTATGCTTTAATGACTGAAAAGTATAAAATAAAACCCATTATGGAACATCATGGTTGCATGGTTAACCTTTATGGAAGAGCAGGAATGGTTGAAAAGGCTTATAGCATCATAACCGATGGAATCGGCTCTGAGGCTGCAGGTCCAACCCAGTGGGGAGCTTTATTGTATTCCTGCTATTTGCATGGAAGTGTAGCTATAGGGGAGATTGCTGCAAACAAGCTTTTTGATTTAGAGCCAGACAATGAACATAATTTTGCACTTCTTATGAAGATCTATGAAAATGCAGGCAGATTAGAAGACATGGAGAGAGTTAGAATGATGCTGGTTGACAGAGGATTGGATTATTAG 1566 0.4317 MIGTLSFPPNPTTLCSAKKNTNKDKSKKYRKWQSEDRSNTLSFPKPKSTPLLIHQQPYPQTKHQAIEQVLKDIEASIEKGIRIDPEIYASLLETCYRSQAIRHGIQVHRLIPTVLLRKNVGVTSKLVRLYASFGYMEDAHDLFDQMSQRDASAFPWNSLISGYAQLGLYDDAIALYFQMVEEGVEPDLFTFPRVLKVCAGLGLLEVGEEVHRHAVRSGFGNDGFVLNALVDMYAKCGHIVKARKIFNRMHRRDSVSWNSMLTAYVHHGLEVEAMDTFCQMVLEGCKPDFVSISTILTGVSSMDLGVQIHGWVIRRGVEWNLSIANSLIIAYSKHGRLDTARWLFNLMPERDVVSWNSIISAHCKHREALALFEQMEEAGVKPDKITFVSLLSACAYLGLVNDGVRLYALMTEKYKIKPIMEHHGCMVNLYGRAGMVEKAYSIITDGIGSEAAGPTQWGALLYSCYLHGSVAIGEIAANKLFDLEPDNEHNFALLMKIYENAGRLEDMERVRMMLVDRGLDY* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0046 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 152 186 IPR002885 -
Lja3g0046 521 Gene3D Tetratricopeptide repeat domain 301 415 IPR011990 GO:0005515
Lja3g0046 521 Gene3D Tetratricopeptide repeat domain 206 300 IPR011990 GO:0005515
Lja3g0046 521 PANTHER - 26 520 - -
Lja3g0046 521 Pfam PPR repeat 126 149 IPR002885 -
Lja3g0046 521 Pfam PPR repeat 226 252 IPR002885 -
Lja3g0046 521 Pfam PPR repeat 425 442 IPR002885 -
Lja3g0046 521 SUPERFAMILY TPR-like 103 258 IPR011990 GO:0005515
Lja3g0046 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Lja3g0046 521 MobiDBLite consensus disorder prediction 1 19 - -
Lja3g0046 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Lja3g0046 521 Pfam E motif 468 514 IPR046848 -
Lja3g0046 521 Pfam PPR repeat family 350 395 IPR002885 -
Lja3g0046 521 Pfam PPR repeat family 156 198 IPR002885 -
Lja3g0046 521 Pfam PPR repeat family 253 299 IPR002885 -
Lja3g0046 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 252 IPR002885 -
Lja3g0046 521 PANTHER OS01G0913400 PROTEIN-RELATED 26 520 - -
Lja3g0046 521 MobiDBLite consensus disorder prediction 1 49 - -
Lja3g0046 521 Gene3D Tetratricopeptide repeat domain 59 205 IPR011990 GO:0005515
Lja3g0046 521 TIGRFAM PPR: pentatricopeptide repeat domain 156 187 IPR002885 -
Lja3g0046 521 TIGRFAM PPR: pentatricopeptide repeat domain 255 288 IPR002885 -
Lja3g0046 521 TIGRFAM PPR: pentatricopeptide repeat domain 325 353 IPR002885 -
Lja3g0046 521 TIGRFAM PPR: pentatricopeptide repeat domain 225 253 IPR002885 -
Lja3g0046 521 TIGRFAM PPR: pentatricopeptide repeat domain 353 383 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0046 Lja-Chr3 527856 530035 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0046 80 519 Glycoside Hydrolase AT3G49170 32.594 2.34e-71 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0046 - - gmx:112997711 840.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0046 3 527856 530035 Lja3g0046 3 527856 530035 ECH