Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0626 ATGGCGAATGTTGCAGCTACAAACATCACCTTTTTCAAACCCTTTTTGCAGCATTACTCCAATTTTCCTTCCTCATTTTTAAACATCAGCATCCCCATTCCCAATCATTACCATAAACCTACCAGCACAAAGTGTCTCTCCCGCTGCCACCTCAGTGTCACTCCCGAACCCTCCCGGGGTGCCCCAGAAACCTTCGTTTCCCAGTTCGCCGCTGACCAGCCGAGGAAGGGCAGTGACATCCTTGTGGAAGCCCTGGAACGTGAAGGGGTGACTCATGTCTTCGGTTACCCGGGGGGAGCCTCCATGGAGATTCACGAAGCCCTCGCTCGCTCCTCCATGATCAGAAACGTGCTGCCCAGACATGAGCAAGGGGGCATCTTTGCGGCAGACGGCTATGCTCGCGCTTCTGGACGCCCTGGTGTCTGCCTCACCTCCTCTGGTCCAGGCGCCACTAATATTATCAGCGGCATTGCGGATGCAAACTTCGATAGCATACCCATCGTGGCCATTACTGGGCAGGTCCCACGAGGCTTGATGGGAACCGATGCCTTCCAAGAAGTCCCACTTATTGATATAACTCGACCGATCACAAAGTTCAATTATTTAGTTCTTGATGTTGAAGACATTCCTCGCACAGTTAAAGAAGCCTTTCTCCTTGCAACTTCAGGCCGACCTGGTCCGGTATTGATCGATATACCAAGAGATATACAGAAAGAGCTCGTGGTTCCGAATTGGAATAAGCCAATTATGCTGCCTGGGAATGCATCCAGATTGCCTAAATTGCCGGAAAAGGCCCACCTGGAAGAAATTGTTCGATTAATTTCAGTGTCAAAGAGGCCAGTTGTGTATGCTGGTGGAGGGTGTATGAACTGCAGTGAAGAGTTAAGGCGGTTTGTGGGGCTCACTGGTATACCTGTGGCAAGTACTTTAATGGGTCTAGGGATTTTCCCATGCACGGATGACCTATCTCTTCACATGCTCGGAATGCATGGGACTATACAAGCAAACTACGCTGTGGACAGGTCTGATTTGTTGCTAGCATTTGGTGTCCGATTTGACGATCGGGTAACAGGTAAAGTTGAAGCTTTCGCTAGAAATGCTACAATTGTTCATATTGATATTGATCCAGCAGAAATCGGAAAGAACAAAAAACCCCATCTTTCAATTTGCACTGATGTAAAGCTGGCATTGGAAGGCATCAACACGATCTTGGAGAAGAATGCAGCAAAGCAACCCACTGCAGAAAACAAAAGAGGAAAAGGGACAAAGTTTAATGACAATGTATCGGCTTGGATAGAGGAAATTGATGAGCAGAAAGAGAAATACCCAGCAAGTTATAGAACATTTGGAGAGGCTATTCCTCCACAGTATGCTATTCAACTTTTGGATGAATTAACTAATGGAAATTCTATTATTTGTACCGGAGTCGGGCAGCATCAGATGTGGGCTGCCCAGTATTGCAAGCATAAGAATCCCCGCCACTGGCTCTCTTCAAGTGGATTAGGAGCAATGGGGTTCGGATTGCCTGCTGCTATGGGTGCTGCACTTGCTAAACCCGACGCAATTGTTGTCGACATTGATGGTGACGGAAGCTTTATGATGAATATCCAGGAATTGGCTACAATACGAGTGGAAAATCTGCCAGTGAAGATTATGCTATTGAATAATCAGCACCTTGGCATGGTTTATCAATATGAGTATGAATATGGGGACGGTGATTCGTTGCACTCATACATGGGGAATCCATCGAACCAGGCCCAAGTATTTCCTGACATGTTGATGTTTGCGGAAGCTTGCAACATAACTGCAGCCCGTGTGACAAAGAAAGCAGAGCTGAGAGAGGCAATAGAGAAGATGTTGAAGACTCCTGGTCCATATCTGCTAGATGTGATGGTACCCCATCAAGCACAAGTGCTGCAGTTGATTCCGGATGGTGGCACTTTCAAAGATGCTATCAAAGGTGCTCAGTAA 1971 0.4713 MANVAATNITFFKPFLQHYSNFPSSFLNISIPIPNHYHKPTSTKCLSRCHLSVTPEPSRGAPETFVSQFAADQPRKGSDILVEALEREGVTHVFGYPGGASMEIHEALARSSMIRNVLPRHEQGGIFAADGYARASGRPGVCLTSSGPGATNIISGIADANFDSIPIVAITGQVPRGLMGTDAFQEVPLIDITRPITKFNYLVLDVEDIPRTVKEAFLLATSGRPGPVLIDIPRDIQKELVVPNWNKPIMLPGNASRLPKLPEKAHLEEIVRLISVSKRPVVYAGGGCMNCSEELRRFVGLTGIPVASTLMGLGIFPCTDDLSLHMLGMHGTIQANYAVDRSDLLLAFGVRFDDRVTGKVEAFARNATIVHIDIDPAEIGKNKKPHLSICTDVKLALEGINTILEKNAAKQPTAENKRGKGTKFNDNVSAWIEEIDEQKEKYPASYRTFGEAIPPQYAIQLLDELTNGNSIICTGVGQHQMWAAQYCKHKNPRHWLSSSGLGAMGFGLPAAMGAALAKPDAIVVDIDGDGSFMMNIQELATIRVENLPVKIMLLNNQHLGMVYQYEYEYGDGDSLHSYMGNPSNQAQVFPDMLMFAEACNITAARVTKKAELREAIEKMLKTPGPYLLDVMVPHQAQVLQLIPDGGTFKDAIKGAQ* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0626 656 NCBIfam biosynthetic-type acetolactate synthase large subunit 76 652 IPR012846 GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660
Vvi16g0626 656 Gene3D - 64 258 - -
Vvi16g0626 656 Pfam Thiamine pyrophosphate enzyme, central domain 268 398 IPR012000 GO:0000287|GO:0030976
Vvi16g0626 656 CDD TPP_AHAS 453 645 IPR039368 GO:0030976
Vvi16g0626 656 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 475 630 IPR011766 GO:0003824|GO:0030976
Vvi16g0626 656 FunFam Acetolactate synthase 70 253 - -
Vvi16g0626 656 CDD TPP_PYR_POX_like 79 234 - -
Vvi16g0626 656 Gene3D - 267 444 - -
Vvi16g0626 656 SUPERFAMILY DHS-like NAD/FAD-binding domain 265 443 IPR029035 -
Vvi16g0626 656 FunFam Acetolactate synthase 260 444 - -
Vvi16g0626 656 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 70 248 IPR029061 -
Vvi16g0626 656 ProSitePatterns Thiamine pyrophosphate enzymes signature. 512 531 IPR000399 GO:0000287|GO:0030976
Vvi16g0626 656 Gene3D - 445 631 - -
Vvi16g0626 656 PANTHER THIAMINE PYROPHOSPHATE ENZYMES 73 648 IPR045229 -
Vvi16g0626 656 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 453 650 IPR029061 -
Vvi16g0626 656 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 76 240 IPR012001 GO:0030976
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0626 Vvi-Chr16 12647649 12649619 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0626 K01652 - vvi:100246801 1322.76