Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01378 ATGATAATAACCACTACTCTCCGACCACTAAGCTTTCCTCCAAGGTTGTGCATTCTGAGCAAGAAGAAGGAGAAGAACGACAACAAAAGTAGAACCAGGAAACTGAGCAAGTGGCAAACAGAGACCAACCATAACATTTTTTCCTTCCCAAAATCCAAATCAACCCCACTTCTCATCAATCACCAACCCAATCCCCAAACAAAATCCCAAGCACTTGAACAAGTCCTCAACGACCTCGAAGCTTCCCTTGAGAAGGGCATCACTATTGAACCCGAAATCTATGCTTCTCTCTTAGAAACATGCTACCGTTTTCAATCCATTCACCACGGCATTCGACTTCACCGCCTTATCCCAACCACCCTTTTGCACAGAAATGTTGGTATATCCTCCAAGCTTCTTAGATTATACGCTTCTTTTGGTTACATGGATGAGGCACATGACCTGTTTGATCAAATGCCTAAGAGAGATGAATATGCATTTCCATGGAATTCACTCATTTCGGGGTATGCTCAAGCTGGCCTCTATCATGATGCCATAGCACTCTACTTCCAAATGGTGGAAGAGGGTGTTGAACCCGACGTGTTTACATTTCCTCGGGTTCTCAAGGCATGCGGAGGAATTCGTTCGGTCGAAGTTGGGGAAGAGGTGCATCGCCACGTGGTTCGTTCTGGTTTTGCCAGTGATAGATTTGTCCTCAATGCACTCCTTGATATGTATTCTAAGTGCGGTGATATTGTGATGGCTCGCAAGATTTTTGAAAAGATGCCCAATAAAGATTCTATTTCGTGGAATTCAATGCTTGCAGCTTATGTTCATCATGGCCTTGAGGTTGATGCAATCAACACTTTCCACAGAATGCTTTTGAAAGGTTATGAGCCTGATTCTGTTTCCATATCGAAAATTCTTACTGGTGTGTCATCATTGATTCTTGGGGCCCAAATTCATGGATGGGTGATCCGGCGTGGGATTGAGTGGAACTTGTCAGTTGCTAATTCCTTGATCAGAGTGTACTCCAATCATGGCAAGTTAGATAAAGCATGTTGGATATTCAATGTGATGCCAGAGAAGGATGTTGTGTCATGGAACACTATAATCTCTGCTCATTGCAAACGAAGAGAGGCTCTAGATTATTTTAATCAAATGGAGCATGCTGGAGTAAAACCTGATAAAGTAACATTTGTTTCATTATTATCAGCTTGTGCTTATTTGGGTTTGGTGAAGGATGGAGAGAGGTTGTTTGCTTTGATGTGTGAAAAATATAAAATAGAACCAATTATGGAACATTATGGTTGTATGGTTAATCTTTGTGGAAGAGTAGGAATGATTGAAAAGGCTTATAGCATCATAGTGAATGGAATGAATTCGGAGAATGCTAGTCCAACTCTCTGGGGAGCTTTGTTGTATGCTTGCTTTTTACACGGAGACGTAACAATAGGAGAGATTGCTGCAAACAAGCTTTTTGATTTGGAGCCAGACAATGAACACAATTTTGTACTTCTCATGAAGATCTACGAAAAGGCAGGCAAATCAGAGGACATGGAGAGAGTTAGATTGATGATGGTAGAAAGAGGCCTGGATTATTAA 1584 0.416 MIITTTLRPLSFPPRLCILSKKKEKNDNKSRTRKLSKWQTETNHNIFSFPKSKSTPLLINHQPNPQTKSQALEQVLNDLEASLEKGITIEPEIYASLLETCYRFQSIHHGIRLHRLIPTTLLHRNVGISSKLLRLYASFGYMDEAHDLFDQMPKRDEYAFPWNSLISGYAQAGLYHDAIALYFQMVEEGVEPDVFTFPRVLKACGGIRSVEVGEEVHRHVVRSGFASDRFVLNALLDMYSKCGDIVMARKIFEKMPNKDSISWNSMLAAYVHHGLEVDAINTFHRMLLKGYEPDSVSISKILTGVSSLILGAQIHGWVIRRGIEWNLSVANSLIRVYSNHGKLDKACWIFNVMPEKDVVSWNTIISAHCKRREALDYFNQMEHAGVKPDKVTFVSLLSACAYLGLVKDGERLFALMCEKYKIEPIMEHYGCMVNLCGRVGMIEKAYSIIVNGMNSENASPTLWGALLYACFLHGDVTIGEIAANKLFDLEPDNEHNFVLLMKIYEKAGKSEDMERVRLMMVERGLDY 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01378 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 258 IPR002885 -
Aip03g01378 527 Gene3D Tetratricopeptide repeat domain 278 372 IPR011990 GO:0005515
Aip03g01378 527 Gene3D Tetratricopeptide repeat domain 373 526 IPR011990 GO:0005515
Aip03g01378 527 Gene3D Tetratricopeptide repeat domain 66 220 IPR011990 GO:0005515
Aip03g01378 527 Pfam PPR repeat family 356 401 IPR002885 -
Aip03g01378 527 Pfam PPR repeat family 162 204 IPR002885 -
Aip03g01378 527 SUPERFAMILY TPR-like 135 512 IPR011990 GO:0005515
Aip03g01378 527 TIGRFAM PPR: pentatricopeptide repeat domain 231 258 IPR002885 -
Aip03g01378 527 TIGRFAM PPR: pentatricopeptide repeat domain 162 194 IPR002885 -
Aip03g01378 527 TIGRFAM PPR: pentatricopeptide repeat domain 359 389 IPR002885 -
Aip03g01378 527 TIGRFAM PPR: pentatricopeptide repeat domain 261 295 IPR002885 -
Aip03g01378 527 Pfam PPR repeat 232 258 IPR002885 -
Aip03g01378 527 Pfam PPR repeat 261 290 IPR002885 -
Aip03g01378 527 Pfam PPR repeat 132 155 IPR002885 -
Aip03g01378 527 Pfam PPR repeat 428 448 IPR002885 -
Aip03g01378 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 259 293 IPR002885 -
Aip03g01378 527 PANTHER OS01G0913400 PROTEIN-RELATED 35 526 - -
Aip03g01378 527 Pfam E motif 473 524 IPR046848 -
Aip03g01378 527 PANTHER - 35 526 - -
Aip03g01378 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 158 192 IPR002885 -
Aip03g01378 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01378 Aip-Chr3 14206229 14208077 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01378 95 525 Glycoside Hydrolase AT3G49170 33.937 3.01e-73 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01378 - - gmx:112997711 809.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01378 03 14206229 14208077 Aip03g01378 03 14206229 14208077 ECH