Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0017 ATGATAGTCTCTGTTCAATTCCCTTCCACCTATTTGTGCTCTTTGAAAAAGAACAACAAAAGTAAAATAAGTAGGAAACTTAGGAAGTGGCTAAGCCAAGAATGCAACAACAACATTAACACTCTTTCTTTCCCTAAATCCAAACCAACCCCACTCCTCATCCATCACAAACCTTATACCCAAACAAAACTCCAAGCACTTGAACTAGTCCTCAAAGACATTGAAGCCTCTTTTGATAAAGGTATCAATATTGACCCTGAACTCTATGCTTCTTTGTTAGAAACTTGCTACAACATGCAAGCCATTCATTATGGTATTCGACTTCATCGCCTTATCCCACCCACCCTTCTGCATAGAAATATTGGCATCTCCTCAAAGCTTGTAAGGCTATATGCTTCTTATGGCTACATGGATGAGGCTCACCAAGTGTTTGATAAAATGTCTAACAAGGGTGATTCTGCTTTTCCATGGAATTCACTTATCTCAGGTTATGCTCAAATCGGTCTCTATCACGATGCTATTGCACTCTATTTCCAAATGGTGGAAGACGGTGTTGAACCTGACCTTTTCACCTTCCCCCGGGTCCTTAAAGCTTGTGGTGGAATTGGGTCACTTCAAGTAGGGGAAGAGGTGCATCGTCATGTGGTTCGTCATGGGTTATCTCATGATGTGTTTGTCCTCAATGCACTACTTGACATGTATTCTAGGTGTGGGGACATTGTTAAGGCTCAAAAGGTCTTTAACATTATGCCTCGTAGAGACTCTGTTTCATGGAACTCAATGCTTGCAGCTTATATTCATCATGGCCTTGAGGTTGAGGCAGTCAACATTTTCCGCCAAATGATTTTGGAAGCTTATGAACCAGACTCTGTTTCCATATCAAAAGTTCTCACAGGTGTGTCATCACTGCACCTCGGGGCCCAAATTCATGGATGGGTGATACGGCAAGGGGTTCAGTGGAACTTGTCCATTGCTAATTCCTTGATCATAGTGTATGCCAGTCACGGCAAGTTGCATAAGGCGCGTTGGATATTCAATCAAATGCCGGAGAGGGATGTTATTTCTTGGAATTCTATAATATATGCTCATCGCAAGCACCGAAAAGCCCTAGCTTATTTTGAGCAAATGGAGGAAGCTGGTGTGGAGCCTGATAAGATAACATTTGTTTCACTGTTATCAGCTTGTGCCTATTTAGGTTTGGCTAAGGATGGAGAGAGATTGTTTGCTTTAATGTGTGAAAAATATAAAATAAAACCAATCATGGAACATTATGGGTGTATGGTTAACCTTTATGGAAGAGCAGGACGGATTAAAAAGGCTTATAGCATCATAGTTGACACAATGGATTCTGAGGCTGTTGGTCCAACTGTATGGGGAGCTTTATTATATGCCTGCTTTTTGCATGGAAATGTAAGTATAGGAGAGATTGCTGCAAACAAGCTTTTTGATTTGGAACCAGACAGTGAACACAATTTTGTACTTCTTATGAAGATCTATGAAAATGCAGGCAGATTAGAGGACATGGAGAGAGTTAGAATGATGCTGGTCCACAGAGGATTGTATTATTAG 1569 0.4098 MIVSVQFPSTYLCSLKKNNKSKISRKLRKWLSQECNNNINTLSFPKSKPTPLLIHHKPYTQTKLQALELVLKDIEASFDKGINIDPELYASLLETCYNMQAIHYGIRLHRLIPPTLLHRNIGISSKLVRLYASYGYMDEAHQVFDKMSNKGDSAFPWNSLISGYAQIGLYHDAIALYFQMVEDGVEPDLFTFPRVLKACGGIGSLQVGEEVHRHVVRHGLSHDVFVLNALLDMYSRCGDIVKAQKVFNIMPRRDSVSWNSMLAAYIHHGLEVEAVNIFRQMILEAYEPDSVSISKVLTGVSSLHLGAQIHGWVIRQGVQWNLSIANSLIIVYASHGKLHKARWIFNQMPERDVISWNSIIYAHRKHRKALAYFEQMEEAGVEPDKITFVSLLSACAYLGLAKDGERLFALMCEKYKIKPIMEHYGCMVNLYGRAGRIKKAYSIIVDTMDSEAVGPTVWGALLYACFLHGNVSIGEIAANKLFDLEPDSEHNFVLLMKIYENAGRLEDMERVRMMLVHRGLYY 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0017 522 PANTHER OS01G0913400 PROTEIN-RELATED 29 520 - -
Lal1g0017 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 153 187 IPR002885 -
Lal1g0017 522 TIGRFAM PPR: pentatricopeptide repeat domain 256 289 IPR002885 -
Lal1g0017 522 TIGRFAM PPR: pentatricopeptide repeat domain 363 384 IPR002885 -
Lal1g0017 522 TIGRFAM PPR: pentatricopeptide repeat domain 157 188 IPR002885 -
Lal1g0017 522 PANTHER - 29 520 - -
Lal1g0017 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Lal1g0017 522 Gene3D Tetratricopeptide repeat domain 205 303 IPR011990 GO:0005515
Lal1g0017 522 Gene3D Tetratricopeptide repeat domain 63 204 IPR011990 GO:0005515
Lal1g0017 522 Pfam E motif 468 515 IPR046848 -
Lal1g0017 522 Gene3D Tetratricopeptide repeat domain 304 400 IPR011990 GO:0005515
Lal1g0017 522 Gene3D Tetratricopeptide repeat domain 401 520 IPR011990 GO:0005515
Lal1g0017 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 253 IPR002885 -
Lal1g0017 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Lal1g0017 522 Pfam PPR repeat 227 253 IPR002885 -
Lal1g0017 522 Pfam PPR repeat 256 282 IPR002885 -
Lal1g0017 522 Pfam PPR repeat 127 151 IPR002885 -
Lal1g0017 522 Pfam PPR repeat 423 443 IPR002885 -
Lal1g0017 522 Pfam PPR repeat family 352 396 IPR002885 -
Lal1g0017 522 Pfam PPR repeat family 157 199 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0017 Lal-Chr1 185599 187167 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0017 81 520 Glycoside Hydrolase AT3G49170 33.038 6.32e-75 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0017 - - gmx:112997711 781.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0017 1 185599 187167 Lal1g0017 1 185599 187167 ECH