Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g3743 ATGATAGCCACTCTTCAACCGCTATGCTTCACTCCTACAACTTACACGAGGTTGTGCTCTCTGAAGAATAAGCAGAAGAACAGCAACAAAAGTAAAAGTAGGAAACAGAGCAACAACAACAACACTCTTTCTTCTTTCCCAAAACCCAAACCAACCCCACTTATCATCCATCACCAACCTCGTCCTCAAACAAAATCCCAAGCACTCGAACAAGTCCTCAACGACCTCGAAGCCTCTCTTGAAAAGGGCATCGAAATTGACCCTGAAATTTATGCTTCTCTCTTAGAAACATGTTACCGTTTGCAAGCCATTCACCACGGTATCCGAGTTCACCGCCTGATTCCAGCGACCCTCTTGCGCAAAAACGTTGGAATCTCTTCCAAGCTTCTCAGGTTATATGCCTCTTGTGGTTACATGGATGAGGCACACGACCTGTTTGATCAAATGGCTAAAAGGGATGAATATGCGTTTCCATGGAATTCGCTCATCTCTGGTTATGCTCAACTTGGCCTCTATCATGATGCCATTGCGCTCTACTTCCAAATGGTTGAAGAGGGTGTTGAACCCGACGTGTTCACGTTCCCTCGTGTTCTCAAGGCTTGTGGGGGAATTGGGTCGGTTCAAGTTGGGGAAGAGGTGCATCGCCATGCGGTTCGGTCTGGTTTTGCCAATGATGGGTTTGTCCTCAATGCACTCCTTGATATGTATTCTAAGTGTGGTGACATTGTGAAGGCTCGAAAGATCTTTCACAAGATGCCTCATAAAGATTCTGTTTCGTGGAATTCAATGCTTGCTGCTTATGTTCATCATGGCCTTGAGGCTGATGCAATCAACACCTTCCGCCAAATGGTTTTGGAAGGTTACGAACCTGATTCTGTTTCCATATCCAAAATCCTTACTGGGGTGTCATCAATGGATCTTGGGGTCCAAATTCATGGATGGGTTATCCGGCATGGGATTGAGTGGAACTTGTCCATTGCTAATTCCTTGATCGTAGTCTACTCCAACCATGGCAAGTTGGATAAAGCATGTTGGATATTTAATGTGATGCCAGAGAGGGATGTTGTGTCATGGAATTCTATAATATCTGCTCATTCCAAAGGCAGGGAAGCCCTTGCTTATTTTGAGCAAATGGTGAATGCTGGTGCAAGACCTGATAAAGTGACATTTGTTTCAGTATTATCAGCTTGTGCCAATTTAGGTTTGGTTAAGGATGGAGAGAGTTTATTTGCTTTGATGTGTGGGAAATATAAGATAGAACCAATTATGGAACATTATGGTTGTATGGTTAACCTTTATGGAAGAGCAGGACAGATTAAAAAGGCTTATAGCATCATAGTCAACAGAATGGACTCTGAGGCTGTTGGTCCAACTCTTTGGGGAGCTTTGTTGTATGCCTGCTTTTTGCACGGAGATGTAACGATAGGAGAGATTGCTGCAAACGAGCTTTTTGATTTGGAGCCGGATAATGAACATAATTTTGTACTTCTTATGAAGATCTATGAAAATGCAGGCAGGTCAGAGGATGTGGAGAGAGTTAGGATGATGCTGATTGACAGAGGATTGGATTATTAG 1575 0.4349 MIATLQPLCFTPTTYTRLCSLKNKQKNSNKSKSRKQSNNNNTLSSFPKPKPTPLIIHHQPRPQTKSQALEQVLNDLEASLEKGIEIDPEIYASLLETCYRLQAIHHGIRVHRLIPATLLRKNVGISSKLLRLYASCGYMDEAHDLFDQMAKRDEYAFPWNSLISGYAQLGLYHDAIALYFQMVEEGVEPDVFTFPRVLKACGGIGSVQVGEEVHRHAVRSGFANDGFVLNALLDMYSKCGDIVKARKIFHKMPHKDSVSWNSMLAAYVHHGLEADAINTFRQMVLEGYEPDSVSISKILTGVSSMDLGVQIHGWVIRHGIEWNLSIANSLIVVYSNHGKLDKACWIFNVMPERDVVSWNSIISAHSKGREALAYFEQMVNAGARPDKVTFVSVLSACANLGLVKDGESLFALMCGKYKIEPIMEHYGCMVNLYGRAGQIKKAYSIIVNRMDSEAVGPTLWGALLYACFLHGDVTIGEIAANELFDLEPDNEHNFVLLMKIYENAGRSEDVERVRMMLIDRGLDY* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g3743 524 SUPERFAMILY TPR-like 101 283 IPR011990 GO:0005515
Aev04g3743 524 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Aev04g3743 524 Pfam PPR repeat 129 152 IPR002885 -
Aev04g3743 524 Pfam PPR repeat 425 445 IPR002885 -
Aev04g3743 524 PANTHER OS01G0913400 PROTEIN-RELATED 27 523 - -
Aev04g3743 524 Pfam PPR repeat family 255 302 IPR002885 -
Aev04g3743 524 Pfam PPR repeat family 353 399 IPR002885 -
Aev04g3743 524 Pfam PPR repeat family 159 201 IPR002885 -
Aev04g3743 524 MobiDBLite consensus disorder prediction 21 48 - -
Aev04g3743 524 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Aev04g3743 524 PANTHER - 27 523 - -
Aev04g3743 524 Gene3D Tetratricopeptide repeat domain 64 208 IPR011990 GO:0005515
Aev04g3743 524 Gene3D Tetratricopeptide repeat domain 354 523 IPR011990 GO:0005515
Aev04g3743 524 MobiDBLite consensus disorder prediction 21 61 - -
Aev04g3743 524 TIGRFAM PPR: pentatricopeptide repeat domain 228 255 IPR002885 -
Aev04g3743 524 TIGRFAM PPR: pentatricopeptide repeat domain 258 292 IPR002885 -
Aev04g3743 524 TIGRFAM PPR: pentatricopeptide repeat domain 159 191 IPR002885 -
Aev04g3743 524 Gene3D Tetratricopeptide repeat domain 209 306 IPR011990 GO:0005515
Aev04g3743 524 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 155 189 IPR002885 -
Aev04g3743 524 Pfam E motif 470 517 IPR046848 -
Aev04g3743 524 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 255 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g3743 Aev-Chr4 34731236 34732810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g3743 83 522 Glycoside Hydrolase AT3G49170 32.373 1.92e-72 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g3743 - - gmx:112997711 822.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g3743 04 34731236 34732810 Aev04g3743 04 34731236 34732810 ECH