Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01208 ATGGCTGTGCTCATCATTTTTCACCTGCTTGCAATATTTATGCCTGCTTTGGGAGATGCTTTTATTGGTGTCAACATTGGTACAGATGTGACTAACATGCCAAGTCCAACAGAGGTTGTGACCCTTCTTAAGGCTCAAGGTATCCAACATGTTAGACTATATGATGCTGACAGAGCCATGCTTCATGCACTTGCCAACACAGGAATCCGTGTAATTGTTTCTGTTCCCAATGACCAGCTTCTCGGCATTGGTCAGTCCAATGCCACCGCCGCCAATTGGGTTGCACGCAATATCATTGCTCATGTCCCTGCTACCAACATTACTGCCATAGCAGTTGGTTCTGAAGTCCTAACATCCCTCACCAATGCAGCTCCTGTCCTAGTCTCAGCACTAAAATTCCTTCAAGCTGCTCTAGTTGCAGCCAATCTTGATCAGCAAATCAAAGTCTCTACTCCACACTCTTCTTCTGTCATCCTTGACTCTTTCCCACCTTCTCAGGCATTTTTTAATAAAACTTGGGATCCTGTCATGGTTCCCTTGCTCAAATTTTTGCAATCTACAGGTTCATATCTTATGCTCAATGTGTACCCTTATTATGATTTCATGAAACCCAGTGCCGTAATCCCTCTAGACTATGCTTTGTTCCGGCCCTTGCCTCCGAATAAAGAAGCTATTGATTCCAACACCCTTCTGCATTATACTAATGTCTTTGATGCAGTTGTTGATGCTGCTTATTTTGCAATGTCATATTTGAACTTTACCAACATCCCTATTTTAGTCACCGAGTCAGGATGGCCCTCCAAAGGAGATTCGTCCGAGCCAGATGCAACTATTGATAATGCTAACACTTACAATAGTAACTTGATCAGGCACGTCCTTAACAATAGTGGAACTCCTAAGCAACCTGGAATTGCAATTAGCACTTATATTTATGAGCTTTATAATGAAGACTTGAGAACAGGTCCAGTGTCTGAGAATAACTGGGGGCTGTTTTATGCTAATGGAGCTCCAGTGTATACCTTGCACTTGACTAATGCTGGTACTGTATTTGCAAATGACACAACAAACCAAACCTTTTGTGTTGCCAAGAGTAATGCAGATACTAAGATGCTTCAGGCTGCACTTGATTGGGCTTGTGGACCGGGGAAGGTGGATTGTTCGCCATTGCTGCAGGGTCAACCGTGTTATGATCCAAATAATGTAGCTGCGCATGCTACATATGCTATCAATGCTTATTATCAGCAGATGGCTAAATCTGCTGGGACCTGTGATTTCAAAGGAGTTGCCTCTGTCACCACTACAAATCCAAGTCATGGTTCCTGTATATTTCCTGGAAGTTATGGAAAAAATGGTAGCAGCATAAATGGCACAGAACTGGCTCCATCTACCAATTCCACAAATTCAGGGTGCTTATCACAGTATTACAATGGTGGATCTTTAACAAGCTCTCTGATTCTTACTTTAATTTTGAGTGTAGCTGTCTTGTAA 1488 0.4261 MAVLIIFHLLAIFMPALGDAFIGVNIGTDVTNMPSPTEVVTLLKAQGIQHVRLYDADRAMLHALANTGIRVIVSVPNDQLLGIGQSNATAANWVARNIIAHVPATNITAIAVGSEVLTSLTNAAPVLVSALKFLQAALVAANLDQQIKVSTPHSSSVILDSFPPSQAFFNKTWDPVMVPLLKFLQSTGSYLMLNVYPYYDFMKPSAVIPLDYALFRPLPPNKEAIDSNTLLHYTNVFDAVVDAAYFAMSYLNFTNIPILVTESGWPSKGDSSEPDATIDNANTYNSNLIRHVLNNSGTPKQPGIAISTYIYELYNEDLRTGPVSENNWGLFYANGAPVYTLHLTNAGTVFANDTTNQTFCVAKSNADTKMLQAALDWACGPGKVDCSPLLQGQPCYDPNNVAAHATYAINAYYQQMAKSAGTCDFKGVASVTTTNPSHGSCIFPGSYGKNGSSINGTELAPSTNSTNSGCLSQYYNGGSLTSSLILTLILSVAVL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01208 495 SUPERFAMILY (Trans)glycosidases 22 342 IPR017853 -
Phco5g01208 495 FunFam Glucan endo-1,3-beta-glucosidase 4 353 447 - -
Phco5g01208 495 ProSitePatterns Glycosyl hydrolases family 17 signature. 256 269 IPR000490 GO:0004553|GO:0005975
Phco5g01208 495 Gene3D - 352 444 - -
Phco5g01208 495 FunFam Glucan endo-1,3-beta-glucosidase 3 21 346 - -
Phco5g01208 495 Pfam Glycosyl hydrolases family 17 22 342 IPR000490 GO:0004553|GO:0005975
Phco5g01208 495 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 11 432 IPR044965 GO:0004553|GO:0005975
Phco5g01208 495 Pfam X8 domain 359 429 IPR012946 -
Phco5g01208 495 SMART X8_cls 358 443 IPR012946 -
Phco5g01208 495 Gene3D Glycosidases 21 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01208 Phco-Chr5 45783631 45788686 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g01208 5 45783631 45788686 Phco5g01208 5 45783631 45788686 ECH