Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03515 ATGGTGACCCACCAATCAACTGCAGAGTCTGCAACAGTAATCTACGCCATGTCCTTCCTGTCTTTTAGTGGGATTTTGGGAATAATGTCATTGCGTCCCAACTCATCACACTATGCTTTTATTGGTGTCAACATTGGTACAGCTGTGACTGACATGCCAAGTCCAACAGAGGTTGTGGCCCTTCTTGAGGCTCAAGGTATTCAACATGTTAGACTATATGATGCTGACAGAGCCATGCTCCGTGCACTTGCCAACACAGGAATCCGTGTAATTGTTTCTGTTCCTAATGACCAGCTTCTCGGCATTGGTCAGTCCAATGCCACGGCTGCCAATTGGGTTTCACGCAATGTCATAGCTCATGTTCCTGCTACCAACATTACTGCCATAGCAGTTGGTTCTGAAATCCTAACTTCCATCCCAAATGCAGCTCCTGTCCTAGTCTCAGCACTAAAATTCATTCAAGCTGCTTTAGTTGCAGCCAATCTTGATCAGCAAATCAAAGTCTCTACTCCACACTCTTCTTATATCATCCTTGACTCTTTCCCACCTTCTCAGGCATTTTTTAATAAAACTTGGGATCATGTCATGGTTCCCTTGCTCAAATTTTTGCAATCAACAGGTTCTTATCTTATGCTCAATGTGTACCCTTATTATGATTTCATGCAAAACAAAGATGCAATCCCTCTAGACTATGCTTTGTTCCGGCCCTTGCCCCCAAATAAAGAAGCTATTGATTCCAACACCCTCCTGCATTATACTAATGTCTTTGATGCAGTTGTTGATGCTGCTTATTTTGCAATGTCGTATTTGAACTTTACCAACATCCCTATTTTAGTCACTGAGTCAGGATGGCCCTCCAAAGGAGATTCGTCTGAGCCGGATGCAACTATTGATAATGCTAACACCTACAATAGTAACTTGATCAGGCATGTCCTTAACAATAGCGGGACTCCTAAGCAACCTGGAATTGCAATTAGCACTTATATTTATGAGCTCTATAATGAAGACTTAAGAACAGGTCCAGTGTCTGAGAATAATTGGGGACTGTTTGATGCTAATGGAGCTCCAGTGTATACCTTACACTTGACTAATTCTGGTACTATATTTGCAAATGACACAACAAACCAAACCTTTTGTGTTTCTAAGAGTAATGCAGATACTAAGATGCTTCAAGCTGCACTAGATTGGGCTTGTGGACCGGGGAAGGTGGATTGTTCACCATTGCTGCAGGGTCAACCGTGTTATGAACCAAATAGTGTAGCTGCACATGCTACATATGCTATCAATGCTTACTATCAGCTGATGGCTAAATCTCCAGGGACCTGTGATTTCAAAGGAGTTGCCTCTGTCACAACTACCAATCCAAAGGATTCAAAGGATGGCGAGGAAGCATGCCTCAGAGTTGTGGAAGTTGTCAATGGTCCAATGGCTCAACTGCTGTCTTGA 1446 0.4288 MVTHQSTAESATVIYAMSFLSFSGILGIMSLRPNSSHYAFIGVNIGTAVTDMPSPTEVVALLEAQGIQHVRLYDADRAMLRALANTGIRVIVSVPNDQLLGIGQSNATAANWVSRNVIAHVPATNITAIAVGSEILTSIPNAAPVLVSALKFIQAALVAANLDQQIKVSTPHSSYIILDSFPPSQAFFNKTWDHVMVPLLKFLQSTGSYLMLNVYPYYDFMQNKDAIPLDYALFRPLPPNKEAIDSNTLLHYTNVFDAVVDAAYFAMSYLNFTNIPILVTESGWPSKGDSSEPDATIDNANTYNSNLIRHVLNNSGTPKQPGIAISTYIYELYNEDLRTGPVSENNWGLFDANGAPVYTLHLTNSGTIFANDTTNQTFCVSKSNADTKMLQAALDWACGPGKVDCSPLLQGQPCYEPNSVAAHATYAINAYYQLMAKSPGTCDFKGVASVTTTNPKDSKDGEEACLRVVEVVNGPMAQLLS 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03515 481 ProSitePatterns Glycosyl hydrolases family 17 signature. 275 288 IPR000490 GO:0004553|GO:0005975
Spst4g03515 481 Pfam Glycosyl hydrolases family 17 41 361 IPR000490 GO:0004553|GO:0005975
Spst4g03515 481 SUPERFAMILY (Trans)glycosidases 41 361 IPR017853 -
Spst4g03515 481 Gene3D - 371 478 - -
Spst4g03515 481 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 32 451 IPR044965 GO:0004553|GO:0005975
Spst4g03515 481 Gene3D Glycosidases 40 368 - -
Spst4g03515 481 SMART X8_cls 377 467 IPR012946 -
Spst4g03515 481 FunFam Glucan endo-1,3-beta-glucosidase 3 40 365 - -
Spst4g03515 481 FunFam Glucan endo-1,3-beta-glucosidase 4 372 464 - -
Spst4g03515 481 Pfam X8 domain 378 448 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03515 Spst-Chr4 76103796 76112886 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03515 39 455 Glycoside Hydrolase AT2G01630 76.978 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03515 K19891 - gmx:100810169 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03515 4 76103796 76112886 Spst4g03515 4 76103796 76112886 ECH