Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g00829 ATGATAGCCACTCTGCAAAAACCAAGTCTCTGTTCAACTTATATGATCCTATTCTGCTCTTCAAAGTCCAGAGAAAGCAAGAAACTGAAACAACTGCAACGTAGGGAAATCCAAAAAGGCAAGAACACCCTCCCTTTCCCAAAACCAACACCAACCCCGCTCATTATCCACCATGAACcttataaacaaacaaaattcgAAGCCCTTGATGCAGTTGTCAAAGATCTTGAAGCATCCATTGAGAAAGGTATAAAAATTGATACTGAAATCTATGCTTCTCTATTAGAAACCTGCTACCGTTTGCAAGCCATTGATTACGGTATCCGAGTTCACCGCCTTATTCCTGTAAACCTTTTAAGAAGAAATGTTGGGCTTTCATCAAAGCTTGTACGGTTGTATGCCTCGTTTGGTTACATGGATGAGGCACACGACCTGTTTGATCAAATGCCTAAGAGGGATGTGTCTGCATTCCCTTGGAATTCACTTATCTCGGGATATGCTGAAGTGGGCCTATTTGATGATGCCATAGCACTATACTTTCAAATGGTTGAAGAGGGTGTTCAACCTGACTTATTCACATTCCCTCGGGTTCTAAAAGCTTGTGGGGGAATTGGGTCTGTTCAAGTAGGGGAGGAGGTGCATCGGCATGTAGTTCGGTCTGGATTTGCCAATGATGGGTTTGTTCTTAATGCACTTGTGGACATGTATTCTAAATGTGGTGACATTGTAAGGGCTCGAAAATCCTTTAACTTGATACCTACACGGGATATTGTTTCATGGAATTCAATGCTCACAGCGTATATTCATCATGGGGTTGAGGTTGAGGCAGTGAACATATTTTACCAAATGCTTTCAGAAGGATGCGAACCTGACTCAGTTTCCATATCCACAATTCTCACAGGTATGTCATCACTGAATCTTGTTTTCCAAATTCATGGATGGGTAATTCGGCATGGAGTTGAGTGGAACTTGTCAGTTGCCAATTCCTTGATCATAATGTATTCCAATCATGGCAAGCTGGATCAAGCATGTTGGATATTCAATAAAATGCCAGAGAGGGATGTTGTTTCATGGAATTCTATAATATCTGCTCATTCCAAACATCGAGAATCCCTTGtgtattttgagaaaatgcaGCAAGTGGGTGCAAAGCCAGATAAGATAACATTTGTTTCACTGCTATCTGCTTGTGCCCATTTAGGCTTGGTGAAGGATGCAGAGAGATTGTTCTCTTTAATGAGTGAAAGATATAGAATAAACCCAAGTATGGAACATTATGCTTGTATGGTTAATCTTTATGGAAGAGCAGGGTTAATCAAAGAAGCCTATGAAATTATTGTAGACAGAATGAAGGGTGAAGCTGGCCCAACCGTGTGGGGAGCTTTGTTGTATTCGTGCTTTCTGCATGGCAATGTATCTACTGGGGAGATAGCTGCCAACAAGCTGTTCGATTTGGAGCCAGATAATGAACATAATTTTGAACTTATGATGAAGATCTATAGTAATGCTGGCCAAACAGAGGACATGGAGAGAGTAAAAATTATGCTGATTGAGAGAGGATTGGATCATTA 1571 0.4023 MIATLQKPSLCSTYMILFCSSKSRESKKLKQLQRREIQKGKNTLPFPKPTPTPLIIHHEPYKQTKFEALDAVVKDLEASIEKGIKIDTEIYASLLETCYRLQAIDYGIRVHRLIPVNLLRRNVGLSSKLVRLYASFGYMDEAHDLFDQMPKRDVSAFPWNSLISGYAEVGLFDDAIALYFQMVEEGVQPDLFTFPRVLKACGGIGSVQVGEEVHRHVVRSGFANDGFVLNALVDMYSKCGDIVRARKSFNLIPTRDIVSWNSMLTAYIHHGVEVEAVNIFYQMLSEGCEPDSVSISTILTGMSSLNLVFQIHGWVIRHGVEWNLSVANSLIIMYSNHGKLDQACWIFNKMPERDVVSWNSIISAHSKHRESLVYFEKMQQVGAKPDKITFVSLLSACAHLGLVKDAERLFSLMSERYRINPSMEHYACMVNLYGRAGLIKEAYEIIVDRMKGEAGPTVWGALLYSCFLHGNVSTGEIAANKLFDLEPDNEHNFELMMKIYSNAGQTEDMERVKIMLIERGLDH 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g00829 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 155 189 IPR002885 -
Bva07g00829 523 Pfam E motif 469 515 IPR046848 -
Bva07g00829 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Bva07g00829 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 416 IPR002885 -
Bva07g00829 523 Gene3D Tetratricopeptide repeat domain 354 521 IPR011990 GO:0005515
Bva07g00829 523 TIGRFAM PPR: pentatricopeptide repeat domain 159 190 IPR002885 -
Bva07g00829 523 TIGRFAM PPR: pentatricopeptide repeat domain 388 421 IPR002885 -
Bva07g00829 523 TIGRFAM PPR: pentatricopeptide repeat domain 258 292 IPR002885 -
Bva07g00829 523 Pfam Pentatricopeptide repeat domain 375 434 IPR002885 -
Bva07g00829 523 PANTHER OS01G0913400 PROTEIN-RELATED 29 522 - -
Bva07g00829 523 PANTHER - 29 522 - -
Bva07g00829 523 Gene3D Tetratricopeptide repeat domain 206 308 IPR011990 GO:0005515
Bva07g00829 523 Gene3D Tetratricopeptide repeat domain 62 205 IPR011990 GO:0005515
Bva07g00829 523 Pfam PPR repeat 328 354 IPR002885 -
Bva07g00829 523 Pfam PPR repeat 129 153 IPR002885 -
Bva07g00829 523 Pfam PPR repeat 356 370 IPR002885 -
Bva07g00829 523 Pfam PPR repeat 229 252 IPR002885 -
Bva07g00829 523 Pfam PPR repeat family 256 302 IPR002885 -
Bva07g00829 523 Pfam PPR repeat family 159 201 IPR002885 -
Bva07g00829 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g00829 Bva-Chr7 10312240 10314479 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g00829 83 521 Glycoside Hydrolase AT3G49170 32.444 1.03e-74 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g00829 - - gmx:112997711 763.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g00829 07 10312240 10314479 Bva07g00829 07 10312240 10314479 ECH