Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi4g1544 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g1545 . . . . . . . . . . Ahy13g3044 . Aip03g03445 . . . Amo13g3712 . . . . . . . . . . . . . . . . . Dod04g2552 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal7g4756 . . . . . . . Mtr8g3298 . . . . . . . . . . . . . . . . Pvu9g1606 . . . . . . . . . . . . Tpr3g0801 . . . Tsu02g00631 . . . . Vimu10g01835 . . . . . . .
Vvi4g1546 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g1547 . . . . Adu10g01817 . . . . Aev08g0568 Ahy13g3042 Ahy20g2042 Aip03g03441 Aip10g02400 . . Amo13g3709 . . . Arst10g02316 . . . . . . . . . . . . . . Dod09g1843 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pvu9g1608 . . . . . Spst9g01866 . . . Sto3g3218 . . . . . . . . . . . Vimu10g01839 . . . . . . .
Vvi4g1548 . Acco04g2218 . Accr8g00547 . Adu03g03008 . . . . . . . . . Alju06g2174 . . . . . . . . . Bisa08g1503 Bva05g01539 . . . Cca09g02288 . . Dere03g0416 . . . Enph6g0345 . Glsi02g0378 . . . . . . . . . . . . . . . . . . . . . Lapu3g03449 . . . . . . . Lele22g1522 Lele23g0474 Lele24g1485 . Lja4g0576 . Mal7g4760 . Mepo2g04437 . . . Mibi09g0574 . Mtr8g3302 . . . Phco4g03120 . Prci4g2434 . . . Pste3g01522 . . . . . . . Pvu2g2821 . . . . . Spst3g01286 . . Sto3g3223 . . Tpr3g0798 . . . Tsu02g00627 . . . . . Vimu11g04210 . . . . . .
Vvi4g1549 . . . . . . . . . . Ahy13g3040 . Aip03g03440 . . . Amo13g3707 . . . . . . . . . . . . . . . . . Dod04g2555 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g1550 . . . . . . . Aed7g1313 . . . . . . . . . . Apr3g0437 . . . . . . . . . . . . Cca11g00965 . . . . . . . . . . . Gma16g01050 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja4g3035 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu5g0835 Sto6g4048 . . . . . . . . . . . . . . . . . . .
Vvi4g1551 . Acco11g2486 . Accr9g00014 . Adu05g00309 Aed11g1103 . . . . . Aip05g00266 . . Alju09g2495 . . . Apr7g0290 . Arst5g00383 . Bach4g00841 . Bisa11g1946 . . . . Cca06g01156 . . Dere09g1211 . . . Enph13g0766 . Glsi05g1204 . Gma01g01605 . . . . . . . . . . . . . . . . . . . Lapu2g01004 . Lasa2g03562 . . . . . Lele50g0008 Lele51g0007 Lele52g0007 Lja2g0653 . Mal6g0869 . . Mepo5g01126 . Mesa17g01194 . . Mtr5g1005 . . Phac2g01870 . Phco4g00741 . Prci10g0016 Psa2g3352 . . Pste1g03434 . . . . . Pumo8g01614 . Pvu2g1227 . Rops1g01428 . Seca10g01124 . Spst2g01025 Ssu2g2140 . Sto6g4050 . Tpr2g1230 . . Trre9g01444 Tsu05g00971 . . Vian10g00910 . Vifa1g06285 . Vimu7g03214 . Viun2g01699 . Vivi2g02726 Vra11g0882 .
Vvi4g1552 . . . . . . . . . . . . . . . . . . Apr3g0440 . . . . . . . . . . . . . . . . . . . . . . . . Gma16g01051 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja4g3031 . . . . . . . . . Mtr8g2289 . . . . . . . . . . . . . . . . . . . . . . . . . . Sto6g4052 Sto11g1371 . Tpr4g4404 . . . Tsu04g02703 . . . . . . . . . . . .
Vvi4g1553 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 567 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi4g1544 Chr4 23378676 23378726 +
Vvi Vvi4g1545 Chr4 23382448 23384135 -
Ahy Ahy13g3044 Chr13 122485314 122488074 -
Aip Aip03g03445 Chr03 112605638 112608365 -
Amo Amo13g3712 Chr13 125500079 125502344 -
Dod Dod04g2552 Chr04 49385217 49390399 -
Mal Mal7g4756 Chr7 115849508 115851426 -
Mtr Mtr8g3298 Chr8 43445244 43446896 -
Pvu Pvu9g1606 Chr9 22617152 22620144 +
Tpr Tpr3g0801 Chr3 7586716 7589153 +
Tsu Tsu02g00631 Chr02 5318658 5320438 -
Vimu Vimu10g01835 Chr10 26101263 26106418 +
Vvi Vvi4g1546 Chr4 23394191 23399302 -
Vvi Vvi4g1547 Chr4 23402262 23408794 -
Adu Adu10g01817 Chr10 83250953 83254156 +
Aev Aev08g0568 Chr08 3277441 3280834 -
Ahy Ahy13g3042 Chr13 122464478 122469856 +
Ahy Ahy20g2042 Chr20 115528016 115532624 +
Aip Aip03g03441 Chr03 112584810 112590684 +
Aip Aip10g02400 Chr10 108279456 108282654 +
Amo Amo13g3709 Chr13 125404610 125410258 +
Arst Arst10g02316 Chr10 82167871 82172377 +
Dod Dod09g1843 Chr09 39993304 39995480 +
Pvu Pvu9g1608 Chr9 22632704 22638395 -
Spst Spst9g01866 Chr9 24345444 24349794 +
Sto Sto3g3218 Chr3 36939313 36942868 +
Vimu Vimu10g01839 Chr10 26168263 26172512 -
Vvi Vvi4g1548 Chr4 23417640 23453956 +
Acco Acco04g2218 Chr04 38256711 38265732 +
Accr Accr8g00547 Chr8 8557107 8564130 -
Adu Adu03g03008 Chr03 113175329 113181643 -
Alju Alju06g2174 Chr06 47908599 47918594 +
Bisa Bisa08g1503 Chr08 32679529 32687860 +
Bva Bva05g01539 Chr05 12708452 12717170 -
Cca Cca09g02288 Chr09 48118787 48127012 -
Dere Dere03g0416 Chr03 7955273 7964218 +
Enph Enph6g0345 Chr6 6769155 6777309 +
Glsi Glsi02g0378 Chr02 2410098 2418985 +
Lapu Lapu3g03449 Chr3 57758977 57769065 +
Lele Lele22g1522 Chr22 20896310 20905252 +
Lele Lele23g0474 Chr23 3471498 3473170 -
Lele Lele24g1485 Chr24 20677715 20686541 +
Lja Lja4g0576 Chr4 4811258 4817214 +
Mal Mal7g4760 Chr7 115891114 115902556 +
Mepo Mepo2g04437 Chr2 52856173 52866471 +
Mibi Mibi09g0574 Chr09 7416562 7417409 -
Mtr Mtr8g3302 Chr8 43480408 43490272 +
Phco Phco4g03120 Chr4 52056718 52065030 +
Prci Prci4g2434 Chr4 37087987 37096638 +
Pste Pste3g01522 Chr3 9450720 9467040 -
Pvu Pvu2g2821 Chr2 43869022 43877839 +
Spst Spst3g01286 Chr3 16286055 16294009 -
Sto Sto3g3223 Chr3 36974570 36982581 +
Tpr Tpr3g0798 Chr3 7559917 7570206 -
Tsu Tsu02g00627 Chr02 5266456 5275563 -
Vimu Vimu11g04210 Chr11 63600465 63610762 +
Vvi Vvi4g1549 Chr4 23459594 23530916 +
Ahy Ahy13g3040 Chr13 122304314 122311359 -
Aip Aip03g03440 Chr03 112434022 112441041 -
Amo Amo13g3707 Chr13 125263999 125265325 -
Dod Dod04g2555 Chr04 49461390 49467987 +
Vvi Vvi4g1550 Chr4 23532734 23544583 +
Aed Aed7g1313 Chr7 10872012 10879636 +
Apr Apr3g0437 Chr3 8670845 8678874 +
Cca Cca11g00965 Chr11 20570942 20579816 +
Gma Gma16g01050 Chr16 26509827 26517190 +
Lja Lja4g3035 Chr4 57173533 57181676 -
Ssu Ssu5g0835 Chr5 21627454 21635416 +
Sto Sto6g4048 Chr6 44147445 44154149 +
Vvi Vvi4g1551 Chr4 23545262 23557770 -
Acco Acco11g2486 Chr11 37904582 37916654 -
Accr Accr9g00014 Chr9 206839 217577 +
Adu Adu05g00309 Chr05 3304418 3320616 +
Aed Aed11g1103 Chr11 16628635 16636061 +
Aip Aip05g00266 Chr05 2873314 2882304 -
Alju Alju09g2495 Chr09 47764659 47772631 -
Apr Apr7g0290 Chr7 8221698 8239200 -
Arst Arst5g00383 Chr5 3323071 3340084 +
Bach Bach4g00841 Chr4 5582563 5592905 -
Bisa Bisa11g1946 Chr11 41834723 41846547 -
Cca Cca06g01156 Chr06 25935659 25950595 +
Dere Dere09g1211 Chr09 15967202 15983530 -
Enph Enph13g0766 Chr13 14018542 14030141 +
Glsi Glsi05g1204 Chr05 61601156 61635484 +
Gma Gma01g01605 Chr01 51696904 51715283 +
Lapu Lapu2g01004 Chr2 9430971 9447083 +
Lasa Lasa2g03562 Chr2 541595754 541613192 -
Lele Lele50g0008 Chr50 81199 87791 +
Lele Lele51g0007 Chr51 44621 54108 +
Lele Lele52g0007 Chr52 57016 64558 +
Lja Lja2g0653 Chr2 5897807 5909336 -
Mal Mal6g0869 Chr6 13038430 13048117 +
Mepo Mepo5g01126 Chr5 11380158 11392611 -
Mesa Mesa17g01194 Chr17 15349642 15372647 -
Mtr Mtr5g1005 Chr5 10017608 10031657 -
Phac Phac2g01870 Chr2 20842718 20857043 -
Phco Phco4g00741 Chr4 5708974 5721597 +
Prci Prci10g0016 Chr10 138224 150696 +
Psa Psa2g3352 Chr2 378003499 378017661 +
Pste Pste1g03434 Chr1 15994383 16012803 -
Pumo Pumo8g01614 Chr8 51475063 51492588 +
Pvu Pvu2g1227 Chr2 24010652 24024593 -
Rops Rops1g01428 Chr1 31647493 31672741 +
Seca Seca10g01124 Chr10 10815854 10834840 -
Spst Spst2g01025 Chr2 8909393 8915301 -
Ssu Ssu2g2140 Chr2 77247647 77271047 +
Sto Sto6g4050 Chr6 44161063 44169773 -
Tpr Tpr2g1230 Chr2 14397726 14409013 -
Trre Trre9g01444 Chr9 12345010 12354674 -
Tsu Tsu05g00971 Chr05 8421944 8431150 -
Vian Vian10g00910 Chr10 9311369 9336633 -
Vifa Vifa1g06285 Chr1 982379142 982400071 +
Vimu Vimu7g03214 Chr7 27205795 27210469 -
Viun Viun2g01699 Chr2 26554324 26565020 +
Vivi Vivi2g02726 Chr2 122015941 122038591 +
Vra Vra11g0882 Chr11 7491289 7515416 -
Vvi Vvi4g1552 Chr4 23569936 23589672 -
Apr Apr3g0440 Chr3 8706802 8717977 -
Gma Gma16g01051 Chr16 26543690 26552420 -
Lja Lja4g3031 Chr4 57109075 57117621 +
Mtr Mtr8g2289 Chr8 33197389 33206877 +
Sto Sto6g4052 Chr6 44173592 44178314 -
Sto Sto11g1371 Chr11 13239133 13245270 +
Tpr Tpr4g4404 Chr4 51422505 51430786 -
Tsu Tsu04g02703 Chr04 30854181 30863129 -
Vvi Vvi4g1553 Chr4 23591105 23592241 -
Adu Adu10g01817 Chr10 83250953 83254156 +
Arst Arst10g02316 Chr10 82167871 82172377 +
Pvu Pvu9g1608 Chr9 22632704 22638395 -
Spst Spst9g01866 Chr9 24345444 24349794 +
Vimu Vimu10g01839 Chr10 26168263 26172512 -
Pvu Pvu9g1606 Chr9 22617152 22620144 +
Vimu Vimu10g01835 Chr10 26101263 26106418 +