Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1550 ATGGGAGTGGAATTAGCAACCGATAGAGCTGGATTTCATGAAATGGAAGAAGTTAATTTCAGTGATTCGGAGTTAGTCTATCATGTCAGACACGCTCTTCAATCAGTCCCCTTGGGTGATAGTGACAGTTATGACCAGCTGATTGGGGTACTGCACCATAAGGAACGCCTTGCTCCTGACGAGGTGGCTCTGTTAGTGACGAGTTTAAAGGCCCTATCTGGAGCAGTTTCTTGTATAGATATGGTTCACCATAAGTCTTTGCTTTCTTCTATTTTTGGAATGAGCCTCTGGAACTATGGACCTGATGTAATGGATGCGTTGCTTGAACTAATTTTATCCTTGGCTGCTTCTAGTGGGAATTATCTTGATTGTTCTTTGGATATGCTTGTCAGCAACTTTATGCCCCCTTATTCTTTGCTAGATTTTCTGAAGCAGCCACGTGGTCTTGCAAGGAAAGACCAAGTTCTTTCACGTGTGCATTCAACATTGAAGGATATTGCTGATCTGGTGCCTCTAGCCCCCTCAAGACTAGTTCCAATAGTAATCCAGAGAATGCCTAATGTGTTTACGAAGGAACCTTTGATTATGATATATGTGGAGAACATGTTAAGGTTGGAGGGTGGTGCAATTCGAGAACTTGTTGGGAACATGATGCTTGTGGCACTGATGGACAGGCTGGTAGACTTGGATGTAGAGATTGCATGGGAGGAAGTCTTACAAGATGACTGCAGCAAAGGCATATTTGAGATGGAGCTAGAAGACATGGAGGAGCCTGCAGATGATGTTGAAAATGATGGTGGTGAGCTTCATAGAGGATCTTTAAGTCGAAAGAGTTTAGGGGGAAATTTAATTGCTGAAAAATTAGATAGCTTGATGGTGCTAACTTTCGAACATCTTGAATCTTGTGAAGCGGGTGGCCGTTTGATTGAGGTATTTGAAACTCTCGTACTATCATTTCAGACAACTGTTTTGAATGCATTCAAGTCAAAATTTGCTCAGTTTGTGATGTTCTATGCCTGTGCTCTCGACCCTGAAAATTGTGGTGTGAGATTTGCTAGGGTGCTTGCAGATTTTTTTGTTTGCAGTACTTTTCCACCGCTTAACAGAATGAGTGCTGTTGCTTACCTTGCAAGTTATTTGTCCCGTGGGAAGTTTCTGACAGCCTCCTTTGTTGCTAATATATTGGAAAGGCTGGTGGTTTGGTGTTTGGAATATTGCAAAATCCATGATGGTGACATAAATCCTAAAGCTCATCAAGTTTTTTATTCTGGATGTCAGGCCATCATGTATGTGCTCTGCTTCCGAATGAGGTCAATGATGAATGTTCCTCATCTCAGATCACAGCTTCTCCTTTTGCCTCTGGAGACAATCTTGAAGCATCCATTAAGTCCATTGAAGGTATGCCTACCATCCATAGTGGAGGAATTCCTTCGCCAGGCAAAAGCAGCTCGGTTATTCACCGTGTCAGAGACCTTTATTTTTAGTGACCTGTTGGAGTCAGAACTTTCCAGGGCTTTTGGTGGGATTGAAAGGCTTGACATGTTCTTCCCATTCGACCCATGTTTGCTGAAAAAATGTGACAGGTTCATCAGGCCAAATTTTGTGTACTGGTCAATGATCCGAACTACTTATGATGATGGAGAAGATAGCAGTGATGAAGAACCTGCTGAGGATTATGAGGCTAGTCATCCAGACGATGTTATGAATGATGATGCAATGGCTAGAAGCTATGATAGTCATGACCTTGAACTTGATGAGTTCGACCACTCAATGAACAAAATGTCCATCACACCCAAGAATTCTTTGTATTACAGGTTTGGAGATGAATTAAAGGTACAAATGCCCTCAAGAATCAGACCCTCTACAAGCCCAGAGTCATTATGA 1884 0.423 MGVELATDRAGFHEMEEVNFSDSELVYHVRHALQSVPLGDSDSYDQLIGVLHHKERLAPDEVALLVTSLKALSGAVSCIDMVHHKSLLSSIFGMSLWNYGPDVMDALLELILSLAASSGNYLDCSLDMLVSNFMPPYSLLDFLKQPRGLARKDQVLSRVHSTLKDIADLVPLAPSRLVPIVIQRMPNVFTKEPLIMIYVENMLRLEGGAIRELVGNMMLVALMDRLVDLDVEIAWEEVLQDDCSKGIFEMELEDMEEPADDVENDGGELHRGSLSRKSLGGNLIAEKLDSLMVLTFEHLESCEAGGRLIEVFETLVLSFQTTVLNAFKSKFAQFVMFYACALDPENCGVRFARVLADFFVCSTFPPLNRMSAVAYLASYLSRGKFLTASFVANILERLVVWCLEYCKIHDGDINPKAHQVFYSGCQAIMYVLCFRMRSMMNVPHLRSQLLLLPLETILKHPLSPLKVCLPSIVEEFLRQAKAARLFTVSETFIFSDLLESELSRAFGGIERLDMFFPFDPCLLKKCDRFIRPNFVYWSMIRTTYDDGEDSSDEEPAEDYEASHPDDVMNDDAMARSYDSHDLELDEFDHSMNKMSITPKNSLYYRFGDELKVQMPSRIRPSTSPESL* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1550 627 PANTHER TRANSCRIPTION INITIATION FACTOR IA RRN3 13 625 IPR007991 GO:0001181|GO:0006361
Vvi4g1550 627 MobiDBLite consensus disorder prediction 545 567 - -
Vvi4g1550 627 Pfam RNA polymerase I specific transcription initiation factor RRN3 19 541 IPR007991 GO:0001181|GO:0006361
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1550 Vvi-Chr4 23532734 23544583 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1550 K15216 - vvi:100248166 1236.48