Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03214 ATGGACATTTTTGTAGATATCATCCAGTTGAAGAAATCTCGGAAGGATGTTCCGATGCTGTGTCTTATTGATGATGGTCAAGGGATGAACCATGACGAGGTTATGAAAATGGTATCTTTTGGGCACAAGCAATCTGATAAAGTTGACAAGGACCGCATTGGCAAATTTGGTGTTGGATTCAAAACAGGAGCAATGAGGCTTGGGAGAGATGTTCTGGTTCTAACACAAACAACTACTTCTAGATCTCTAGCTTTTCTTTCACAATCATTGAATGAAGGCAAAGATAATATTGAAATTCCCATAGTCAGCTATTGCCGACAAGGACAACTTATGGAAGTTGACCTAAGTATGCAGTCTGAAGCTTTGGCAAAATACAATTTGAAAGCTATTAAGGATTTTTCACCATTTAACAAGTATCTTATTGGTGAAAAGGCAGCCTTGTTTGGTACCGGTACAGGAACACAAATATACATATGGAACTTGGATGAATGGGGATCAAAGTATTGTTTAGAATGGCATGATGGACTAAAAGGTGGGAGTTCTTTTCACCAAGGTGACATTCTTATCCAAAGCAAGAGGACTCGTTCTCGTCCAGGCCAGATTAGTCAAAAGGTACCATTGGATTACTCACTACGAGCTTATTTAGAAATTATATTTTTAGTTCCTCGAATGAAGATAAGTGTACAAAGAACATTGGTTAAAAGTCGACCACTATCAAAATTCCTTACTCAAACTGTTGTTGAAACTGGTGACATCTTGAGAAGGCCAGTTGAATTAATTCTTGGATTTAGTCAATTAGAGTGGGAGCGGGCCAACTGTGGAATGTTTTTGTATTGGCATGGTCGCCTAATTGAGGCTTACAAGAGAGTTGGTGGAATGACTCATAGTGCAGATGTTGGCCGGGGTGTAATTGGTGTTGTTGATGTGACCAATTTAATGGATGACGAGGATGGTCGGGTGTGGGTACACAATAACAAGCAGGGATTCCAAGACTCGGAACAATATGCATGTCTTGAGCAGTGGCTGAGTAGAAAAGTGGATGAATACTGGGACAACAATTTTGACGCCCTTGAGTTGAACAAAGATAATTGTGTCTTCAAACCTGATCATGAGTGGGTTCAATGTGACAAGTGCAGAAAGTGGAGAATATTACCTACAGATTTTGATAGCAGAAAATTGCCTTTGGAATGGTTTTGTTTTATGAAGCCTTTCAAAGGTCAATGTTCAGATTCTGAACAGAAGATGGCGCCGGGCATAGTTAATGTTTCCACAAAGAGGTCGGGTTATGCTTGCTTGTTGAAGGATTCCAACGATAAAAAGCTGGAAGGTGTTAGGAAAACCTCAGGCGCAGGATTTAGGGTTTGGAATTTGGAAGAGCTTAGGACTCAGGAGGGCTTAGGGCTCAGTTATTCTTTAGGTATGGTGGTCTTATGTGTTACTTCAGAGGGTAACACTCGTATATTTTGGTTTCTGATTTCTGCAATACCCTCCACTGCAGATTATAAATCAATCAAATATGAGGATGCCAAATTTCCAGCATTAAAGCGGTTGAGAAAGGGGCTATGGAAACAGTAG 1575 0.4025 MDIFVDIIQLKKSRKDVPMLCLIDDGQGMNHDEVMKMVSFGHKQSDKVDKDRIGKFGVGFKTGAMRLGRDVLVLTQTTTSRSLAFLSQSLNEGKDNIEIPIVSYCRQGQLMEVDLSMQSEALAKYNLKAIKDFSPFNKYLIGEKAALFGTGTGTQIYIWNLDEWGSKYCLEWHDGLKGGSSFHQGDILIQSKRTRSRPGQISQKVPLDYSLRAYLEIIFLVPRMKISVQRTLVKSRPLSKFLTQTVVETGDILRRPVELILGFSQLEWERANCGMFLYWHGRLIEAYKRVGGMTHSADVGRGVIGVVDVTNLMDDEDGRVWVHNNKQGFQDSEQYACLEQWLSRKVDEYWDNNFDALELNKDNCVFKPDHEWVQCDKCRKWRILPTDFDSRKLPLEWFCFMKPFKGQCSDSEQKMAPGIVNVSTKRSGYACLLKDSNDKKLEGVRKTSGAGFRVWNLEELRTQEGLGLSYSLGMVVLCVTSEGNTRIFWFLISAIPSTADYKSIKYEDAKFPALKRLRKGLWKQ 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03214 524 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 2 428 IPR045261 GO:0016887
Vimu7g03214 524 ProSiteProfiles Zinc finger CW-type profile. 366 416 IPR011124 GO:0008270
Vimu7g03214 524 Gene3D - 358 416 - -
Vimu7g03214 524 Gene3D - 2 146 IPR036890 -
Vimu7g03214 524 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 8 103 - -
Vimu7g03214 524 Pfam CW-type Zinc Finger 371 413 IPR011124 GO:0008270
Vimu7g03214 524 Pfam Morc6 ribosomal protein S5 domain 2-like 209 350 IPR041006 -
Vimu7g03214 524 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 14 143 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03214 Vimu-Chr7 27205795 27210469 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03214 - - vra:106777695 884.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03214 7 27205795 27210469 Vimu7g03214 7 27205795 27210469 ECH