Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00965 ATGGGAAGGGTTCAGGTTGGTGACAAGGCAGAATTCTCGCGGATGGAGAATGGTGATTTCAGTGACTCGGAGCTAATTCATCACTTCAGAGGCGTACTTGTTGCTGTTTCAGCGGGTGATAGGGAGAATTACGATGAGCTCGTTGGTTATTTGCACCCAAAAGGGAATCTTAATCCAGATGAAGTTGCTATACTTGTGACAACTTTGAAGGCACTTTCTGGAGCAGCGTCCTATATAGATTCTGTTCATCATGAAGCCCTTCTTTTCGCTGTTTCCAGAATGAGCTTGTGGAATTATGGAACTGATGTTATGGATGCGCTGCTTGAACTCATTATTTCTTTGGCTGCTTCCAATGGAAAATACATCGATTGGTGTTTGGAGATGCTTGTGAAACATTTTGTGCCACCTTATTACCTCTTAGATTCTCTGAAACAGGAGAATGGAATTGACAGGAAAACTAAAGTTCTGTCTCGGGTGCATGCAGCTTTGAAAGAGATAGCTGATTTGGTGCCCCTTGCACCCCTGCGATTATCTCCCATTGTTGTCCAGAAAATGCCGAGTGTTTTCAGCAAGGAACCTGAGATTGTTATGTATGTTGAGAATATGTTAAAGCTGGAAAGTGGTGCAATTGGAGAAATTATCGGTTCTACAATGCTTCCGGCGCTTGTGGATAGGTTGCTAGATTTGGATGTGGAAATTGGATGGGACGGAATCTTGCAAGAAGATGGCAAATGCATATTTGAAATGGAGTTAGAAGATTTTACTGAATTTGGAGATGATGAGAACTGTGATAGTATGCCTCCATCAGAGTTGTTAAATAGAAGAAAATTGCAAGGCAATTTGGTTGTTGATAAAGTAGATAGCCTTATGGTGCTGACTTTTTTGCACCTTGAATCTTGTCAAAGCAGTGGCCGTTTGGCTGAGGTATTCGATGTTCTACTGGGGTCATTTCAGAAAACTGTATTGAATGCATACAAGTCAAAATTTACCCAGTTTGTGATGTTCTATGCAAGTGCACTGGATCCTGAAGGATGTGGTGTGAAATTTGCTATGGTTCTTACAGATATGTTTTGTCGTGATGTTAATCCCCCTATTACTAGGATGAGTGCTGTTGCTTATCTTGCTAGTTATCTGTCTCGAGCAAAGTTCCTTTCAGCTGCACTAGTCACCAACATCTTACAAAGCTTGGTAAATTGGTGTTATGCCTATTGCAAGTCGCATAATTTTGATATGAACCCACGAGCACATCAAGTTTTTTATTCTGGGTGCCAGGCCGTCATGTATATTCTGTGTTTTCGCTTGAGATCTTTGATGGACATTCCCAGGCTTAAATTGCAGCTTCTTAATATGCCCATGGAGGCAATCTGGAAACATAAATTGAGCCCCTTGAAGGTGTGTTTGCCTACTGTGGTAGTGGAATTTCTCCGACAGGCAAAGGCTGCTCAATTTTTCATGATGTCAGAGACATTTGTTTTCAATGATATGCTTGAGTCTGATTTTTCTAAAGCTTTTGGCGGGATGGATAGACTTGACATGTTCTTTCCATTTGATCCATGTCTATTGAAGAAAAGCGAAAGCTACATAAGGCCTCATTTTGTTCGCTGGTCCAAAGTCAGAACTACATACGATGATGATGATGACAATGAAGTCAGTGATAGTGGCAGTGAAGCTTCAGATGATGATTTTGTTGACAGAAATGCAATGGATATGATTGATGATGACATGATGGTGAGTGTTGAAGGTCTTGATTTTACACCTGACTTGAACAAAATGTCAATCACGCCCAAAAATTCGTTGAAATATGGGTTCGAGACGCGATGTACGCGAATGCCAGCAAGAATCAGACCTTCTACTAGTCCAGAGTCACTGTGA 1872 0.4129 MGRVQVGDKAEFSRMENGDFSDSELIHHFRGVLVAVSAGDRENYDELVGYLHPKGNLNPDEVAILVTTLKALSGAASYIDSVHHEALLFAVSRMSLWNYGTDVMDALLELIISLAASNGKYIDWCLEMLVKHFVPPYYLLDSLKQENGIDRKTKVLSRVHAALKEIADLVPLAPLRLSPIVVQKMPSVFSKEPEIVMYVENMLKLESGAIGEIIGSTMLPALVDRLLDLDVEIGWDGILQEDGKCIFEMELEDFTEFGDDENCDSMPPSELLNRRKLQGNLVVDKVDSLMVLTFLHLESCQSSGRLAEVFDVLLGSFQKTVLNAYKSKFTQFVMFYASALDPEGCGVKFAMVLTDMFCRDVNPPITRMSAVAYLASYLSRAKFLSAALVTNILQSLVNWCYAYCKSHNFDMNPRAHQVFYSGCQAVMYILCFRLRSLMDIPRLKLQLLNMPMEAIWKHKLSPLKVCLPTVVVEFLRQAKAAQFFMMSETFVFNDMLESDFSKAFGGMDRLDMFFPFDPCLLKKSESYIRPHFVRWSKVRTTYDDDDDNEVSDSGSEASDDDFVDRNAMDMIDDDMMVSVEGLDFTPDLNKMSITPKNSLKYGFETRCTRMPARIRPSTSPESL 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00965 623 Pfam RNA polymerase I specific transcription initiation factor RRN3 19 539 IPR007991 GO:0001181|GO:0006361
Cca11g00965 623 PANTHER TRANSCRIPTION INITIATION FACTOR IA RRN3 18 613 IPR007991 GO:0001181|GO:0006361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00965 K15216 - gmx:100814416 1077.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00965 11 20570942 20579816 Cca11g00965 11 20570942 20579816 ECH