Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01835 ATGTCTCCTCACCTAATGGAACTAAGTGCTTCCTCCACTTTAGTTCTCTACCCTGCATCACAGCCACAAGATCAGTCCAAAGAAGAGAATGGAGTGTTGGGTTTTGACTCAAATTTTCAAGAAACGAAAGGGGAAATGCCAAAAGAGTTCTTTTGGCCTTCTAGGGATTTGGTTAAGGCCACACAAGAAGAATTGAAGGAACCCCTTGTGGATTTGGGAGTCATGAAAAATGGTGATGAGAAAGCAATTGCCAACGCTGCAGAGCTTGTAAGAAATGCCTGTTTAAAGCATGGTTTCTTCCAAGTTATCAACCATGGTGTGAACCCAGATCTCATAGATGCTGCTTACCATGAAATTGACACCATTTTCAAGCTTCCTATCACCAAAAAACTCACTGCTCAGAGAAAACCTGGTGCAGTCTCTGGTTACTCTGGGGCTCATGCAGATCGTTACACCTCCAAATTACCATGGAAAGAGACATTTTCTTTCCTCTTCCATCACCAAGGCTTCTCCAATTCCCAGATTGTTGACTACTTTGACTCTGTCTTAGGCCAGGACCTTCCACACACAGGGAGGGTGTATCAAGAGTACTGCGAAGCAATGAAGGAGTTGAGTTTAGTAATAATGGAGCTTTTGGGAATTAGTTTGGGAGTGGATGGTTTGCATTATCGAAGATTTTTTGAAGATGGAGACTCAATAATGAGGTGCAACTATTATCCACCTTGCAACAGTGCGAACCTCACACTAGGAACTGGCCCTCACACTGATCCAACATCACTCACTATTCTTCATCAAGACCAAGTTGGAGGCTTACAAGTTTTTGCTGATAACAAATGGCGTGCTGTTCGCCCGAGATCTGAAGCCTTCGTCGTAAACATTGGTGACACTTTCATGGCATTGTCAAATGGGAGATACAAGAGTTGTCTTCACAGGGCATTGGTGAACTCATACCGAGAGAGAAGGTCATTGGTTTACTTTGTGTGTCCGAAAGAGGACAAAGTGGTGAGACCCCCAAAGTTTCTAATAACCAAAAATGAGGAAAGAAAGTACCCTGATTTTACATGGTCTAGTTTGCGTGAATTCACCCAGAAACACTATAGGGCTGATGTTGCTACACTCCAAAGCTTCATTAAGTGGCAAAGCTCTTCCAACACCTCCAACTTCTAG 1167 0.4336 MSPHLMELSASSTLVLYPASQPQDQSKEENGVLGFDSNFQETKGEMPKEFFWPSRDLVKATQEELKEPLVDLGVMKNGDEKAIANAAELVRNACLKHGFFQVINHGVNPDLIDAAYHEIDTIFKLPITKKLTAQRKPGAVSGYSGAHADRYTSKLPWKETFSFLFHHQGFSNSQIVDYFDSVLGQDLPHTGRVYQEYCEAMKELSLVIMELLGISLGVDGLHYRRFFEDGDSIMRCNYYPPCNSANLTLGTGPHTDPTSLTILHQDQVGGLQVFADNKWRAVRPRSEAFVVNIGDTFMALSNGRYKSCLHRALVNSYRERRSLVYFVCPKEDKVVRPPKFLITKNEERKYPDFTWSSLREFTQKHYRADVATLQSFIKWQSSSNTSNF 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01835 388 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 229 329 IPR005123 -
Vimu10g01835 388 PRINTS Isopenicillin N synthase signature 289 315 - -
Vimu10g01835 388 PRINTS Isopenicillin N synthase signature 254 275 - -
Vimu10g01835 388 PRINTS Isopenicillin N synthase signature 90 107 - -
Vimu10g01835 388 FunFam Gibberellin 20 oxidase 2 37 367 - -
Vimu10g01835 388 SUPERFAMILY Clavaminate synthase-like 39 368 - -
Vimu10g01835 388 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 68 358 - -
Vimu10g01835 388 Pfam 2OG-Fe(II) oxygenase superfamily 231 329 IPR044861 -
Vimu10g01835 388 Pfam non-haem dioxygenase in morphine synthesis N-terminal 68 166 IPR026992 -
Vimu10g01835 388 Gene3D - 37 367 IPR027443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01835 Vimu-Chr10 26101263 26106418 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01835 34 367 Glycosyltransferase AT5G59530 28.090 1.55e-32 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01835 K05282 - gmx:100816834 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01835 10 26101263 26106418 Vimu10g01835 10 26101263 26106418 ECH